Query= MSMg01no407_l16.b1 MSMg01no407_l16.b1 CHROMAT_FILE:
MSMg01no407_l16.b1 PHD_FILE: MSMg01no407_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:27 2005
(549 letters)
>mm_chr3_18765899_18766847
Length = 949
Score = 953 bits (493), Expect = 0.0
Identities = 534/549 (97%), Gaps = 4/549 (0%)
Strand = Plus / Plus
Query: 5 gaattctgagtgggaagaggtggagcaaataatgaagatacaagcagactggtaatagaa 64
|||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 205 gaattctgagtgtgaagaggtggagcaaataatgaaaatacaagcaaactggtaatagaa 264
Query: 65 tcaaagcagagccatattagcagatgggataagaaatgaggaaaagaggtgacctggcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaaagcagagccatattagcagatgggataagaaatgaggaaaagaggtgacctggcct 324
Query: 125 atggaatacagctaaacaccagagagatggaacctctaaaggcaaatcacagacccaaac 184
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 atggaatacggctaaacaccagagagatggaaactctaaaggcaaatcacagacccaaac 384
Query: 185 aaataagacccagatggggactgaggagacaattcagtcagtaaggtaaagtgtttccct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 aaataagacccagatggggactgaggagacaattcagtcagtaaggtaaagtatttccct 444
Query: 245 tgcaagcattagaaccagtatttttccccatgttctacataaaacaaaacaaacaagcaa 304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcaagcattagaactagtatttttccccatgttctacataaaacaaaacaaacaagcaa 504
Query: 305 aactgtacagtggcatgcctgcaatttcaatgctggagaggtagagacagaggatctctg 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaccgtacagtggcatgcctgcaatttcaatgctggagaggtagagacagaggatctctg 564
Query: 365 gagtggccaatagttagtatagcctgatcattaagttccaggccagtgagagatccttct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagtggccaatagttagtatagcctgatcattaagttccaggccagtgagagatccttct 624
Query: 425 aaaaaaaaaaaaaaa-tcaaggcctatggctccaaaggaaca---cctgaggttgacatc 480
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 625 aaaaaaaaaaaaaaaatcaaggtctatggctccaaaggaacaacacctgaggttgacatc 684
Query: 481 aggcctctatacacccctccatacacacacacacaccactgatggtcatttaatcctcta 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggcctctacacacccctccatacacacacacacaccactgatggtcatttaatcctcta 744
Query: 541 tataagata 549
||| |||||
Sbjct: 745 tatgagata 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_l16.g1 MSMg01no407_l16.g1 CHROMAT_FILE:
MSMg01no407_l16.g1 PHD_FILE: MSMg01no407_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:27 2005
(374 letters)
>mm_chr3_18933758_18934529
Length = 772
Score = 644 bits (333), Expect = 0.0
Identities = 349/355 (98%), Gaps = 2/355 (0%)
Strand = Plus / Minus
Query: 1 tggcctcagattgctgagaggcaccccagggcaagctgggtcatgcaggcagccatgaca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 553 tggcctcagattgctgagaggaaccccagggcaagctgggtcatgcaggcagccaagaca 494
Query: 61 gcaacttttatgcttgattgagagatcgatcctacctcattgaataaggtagaagactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gcaacttttatgcttgattgagagatcgatcctacctcattgaataaggtagaagactga 434
Query: 121 tttggggtgggtcctgactttaaccttcagcctccacaagcatgcaggtttggtgacgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttggggtgggtcctgactttaaccttcagcctccacaagcatgcaggtttggtgacgct 374
Query: 181 ggtggtgagctctgcctatatgtgtcctcatacataaaacatggaaaaagattttaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 373 ggtggtgagctctgcctatatgtgtcctcatacataaaacatggaaaaagatt--aaaaa 316
Query: 241 aaagtgatgaaattatacatgtgaatcctcttgacatcactgtttggtcactagagctca 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaagagatgaaattatacatgtgaatcctcttgacatcactgtttggtcactagagctca 256
Query: 301 tcacatagtttgggtagtgtgaacacttagttttaaacagatgttgacttttggg 355
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcacatcgtttgggtagtgtgaacacttagttttaaacagatgttgacttttggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 772
Length adjustment: 9
Effective length of query: 365
Effective length of database: 763
Effective search space: 278495
Effective search space used: 278495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
