ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAAAATACCTAAGCCTTCATTGGAACATCACGGATTTTGTGTTTCT
TAATCTGGATTATCTAGTGGACTACTAAATCCTCTAAAGAAAGGTCAGAC
CCATTATGTGTTGGGCAGGATAATTGGAAGCCTTTCTCCATGAGTATGTC
AGCTTCCTTAAAATAATCACATGCATTATCTCAAATCACAGTGTAAAACC
CACAGGGTTTTCTTAGGTGCTGCTCATGCCATTTCTACTCTGGAATATTT
GCTCTCTAAATAAGCTTCTGCCTAACTAGCTCTGCTTCCATACTGAGTTC
TGTTTTTGTTTTGTTTTTGTTTTTGTTAATACAAAAATGGAGGGATCCTT
AACTGTGGACAGAAACACAGGTTAACCTAATTTATACACTTGTCGCTTAT
TTGAACAGCATTAAGTATTAGCTACCCTCTCCATATAGAAATGATATTTT
CTTGTTGATTAATTAGTTTTATTTATTTATTTGATCCCAAAAACATCTGT
AAAGACTGACAGGTTTTCTTGGCAGGCACATGAAGACATGAGTTTTATCA
CTGGGACCAGCACAGAGGAAGGAAAACTAGTGGTGGCTCTGCTCCATTAC
TAANAGATTATATAAAATGTTATTAAAGTCACCAGGCCAAAGTAAATGTA
TGCCCTCACAGTGCGAATGGTGATTTTGAAAGCAATATATGTGAATTGAA
ATCTTG

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAG
AAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAGCCCTGAGATTCCATCTCACACCAGTCAGAATGGCTGAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCAAGAATGTGGAGAAAGAGGAACC
CTCCTCGATTGCTGGTGGGAATGCAAGCTTGTACAAACACTTTGGAAATC
AGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCG
CAATACCTCTCTTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAA
GACACATGCTCCACTATGATCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCACTCAACAGAGGAATGGATACAGAAAATGT
GGTACATTTATACAATGAAGCTATAATACTATTCAGCTATTAAAAAGAAC
GAATTTATGANATTTCTAGGCAAATGGATGAACCTGGAGGGCATCATCCT
GAGTGAGGTGACCCAATGACAAAAAAACTCACATGATATGTACTCACTGA
TAAGTGGATATTAACCCAGAAACCTAGAATACCCCCGATACCAGATACCA
AGCCCATGAAACTCCAGAAGAACGAAGACCACGGGGTGAACCATTTGCCC
CCTTCTTAAAG

Query= MSMg01no407_n04.b1 MSMg01no407_n04.b1 CHROMAT_FILE:
MSMg01no407_n04.b1 PHD_FILE: MSMg01no407_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:35 2005
         (601 letters)



>mm_chr3_12503978_12504978
          Length = 1001

 Score = 1079 bits (558), Expect = 0.0
 Identities = 588/598 (98%), Gaps = 1/598 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaaaatacctaagccttcattggaacatcacggattttgtgtttcttaatctg 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 gaattctcaaaatacctaagccttcattggaacatcactgattttgtgtttcttaatctg 263

                                                                       
Query: 65  gattatctagtggactactaaatcctctaaagaaaggtcagacccattatgtgttgggca 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  
Sbjct: 264 gattatctagtggactactaaatcctttaaagaaaggtcagacccattatgtgttgggtg 323

                                                                       
Query: 125 ggataattggaagcctttctccatgagtatgtcagcttccttaaaataatcacatgcatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggataattggaagcctttctccatgagtatgtcagcttccttaaaataatcacatgcatt 383

                                                                       
Query: 185 atctcaaatcacagtgtaaaacccacagggttt-tcttaggtgctgctcatgccatttct 243
           |||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 384 atctcaaatcacagtgcaaaacccacagggttgctcttaggtgctgctcatgccatttct 443

                                                                       
Query: 244 actctggaatatttgctctctaaataagcttctgcctaactagctctgcttccatactga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actctggaatatttgctctctaaataagcttctgcctaactagctctgcttccatactga 503

                                                                       
Query: 304 gttctgtttttgttttgtttttgtttttgttaatacaaaaatggagggatccttaactgt 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 gttctgtttttgttttgtttttgtttttgttaatacaaaaatggagggatccttaacttt 563

                                                                       
Query: 364 ggacagaaacacaggttaacctaatttatacacttgtcgcttatttgaacagcattaagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggacagaaacacaggttaacctaatttatacacttgtcgcttatttgaacagcattaagt 623

                                                                       
Query: 424 attagctaccctctccatatagaaatgatattttcttgttgattaattagttttatttat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attagctaccctctccatatagaaatgatattttcttgttgattaattagttttatttat 683

                                                                       
Query: 484 ttatttgatcccaaaaacatctgtaaagactgacaggttttcttggcaggcacatgaaga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttatttgatcccaaaaacatctgtaaagactgacaggttttcttggcaggcacatgaaga 743

                                                                     
Query: 544 catgagttttatcactgggaccagcacagaggaaggaaaactagtggtggctctgctc 601
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 744 catgagttttatcactgggaccagcatggaggaaggaaaactagtggtggctctgctc 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)