Query= MSMg01no408_a23.b1 MSMg01no408_a23.b1 CHROMAT_FILE:
MSMg01no408_a23.b1 PHD_FILE: MSMg01no408_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:54 2005
(501 letters)
>mm_chr3_44165323_44166223
Length = 901
Score = 953 bits (493), Expect = 0.0
Identities = 496/497 (99%)
Strand = Plus / Plus
Query: 5 gaattctctcaaaatctcagatttacctcatcatctatattggaattactaccctagtac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcaaaatctcagatttacctcatcatctatattggaattactaccctagtac 264
Query: 65 aggcatatgcactgattcaaccccactaacattcagtcttcattattcttaaactgaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggcatatgcactgattcaaccccactaacattcagtcttcattattcttaaactgaaaa 324
Query: 125 tctcaatacaccatgcatggaagaagctattaagaattactgataaagtgtctttctgca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctcaatacaccatgcatggaagaagctattaagaattactgataaagtgtctttctgca 384
Query: 185 agctcagaacacagattagcaacaatttcacagccatgactggacaaggctctctatgat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctcagaacacagattagcaacaatttcacagccatgactggacaaggctctctatgat 444
Query: 245 gctcagttttgcaggtcaaaaagaatgtgttactacagtattgaacttcagaccaccaag 304
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 gctcagttttgcaggtcaaaaagaatgcgttactacagtattgaacttcagaccaccaag 504
Query: 305 tacttataacatgtattaatatgaatttaaaaagcaaaataaggtgcagtacacattgaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacttataacatgtattaatatgaatttaaaaagcaaaataaggtgcagtacacattgaa 564
Query: 365 tatccagttcagtgagcagcaatgctcagtcccctcaggtgtacagattccaaagaacag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatccagttcagtgagcagcaatgctcagtcccctcaggtgtacagattccaaagaacag 624
Query: 425 taaggtggacacagaatgaatccaagaagataattgactgatatagatacatagttattc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaggtggacacagaatgaatccaagaagataattgactgatatagatacatagttattc 684
Query: 485 tattttgaatcatcatt 501
|||||||||||||||||
Sbjct: 685 tattttgaatcatcatt 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_a23.g1 MSMg01no408_a23.g1 CHROMAT_FILE:
MSMg01no408_a23.g1 PHD_FILE: MSMg01no408_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:54 2005
(444 letters)
>mm_chr3_44287590_44288435
Length = 846
Score = 770 bits (398), Expect = 0.0
Identities = 434/447 (97%), Gaps = 4/447 (0%)
Strand = Plus / Minus
Query: 1 tctcatcatttggagacttttagggataactgtttcttcttctggcttgtgctcctttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tctcatcatttggagacttttagggataactgtttcttcttctggcttgtgctcctttgc 587
Query: 61 agtataaagtgaaatgaaataatctagtttcagcatcacttagcctcaaaagagagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 agtataaagtgaaatgaaataatctagtttcagcatcacttagcctcaaaagagagaaaa 527
Query: 121 agactttacttgcttatcaagagcaaaatcagtgagggtttttgtctcaagaaaaggtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agactttacttgcttatcaagagcaaaatcagtgagggtttttgtctcaagaaaaggtgg 467
Query: 181 tccttctcaagatacattcatgcagctgaatggagggtaagatgttactgttccagataa 240
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 466 tccttctcaagataccttcatgcagctgaatggagggtaagatgttactcttccagataa 407
Query: 241 ggagagt--gggtaagtgagcagtgtgtaatgtgctcatcatacatcatgaggatctgag 298
||||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 406 ggagagtctgggcatgtgagcagtgtgtaatgtgcttatcatacatcatgaggatctgag 347
Query: 299 gtaaaccctgagaatgtagctcacattggaat-tcttgcatggggaagtagagaaagggg 357
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 346 gtaaaccctgagaatgtagctcacattggaatat-ttacatggggaagtagagaaagggg 288
Query: 358 aacgtctgaaagtctgtgggccagctggccttcattatgcagagaanagaacatgtgtgc 417
|| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 287 aaggtctgaaagtctgtgggccagctggccctcattatgcagagaaaagaacatgtgtgc 228
Query: 418 aaacagattctgaaattactatcttct 444
|||||||||||||||||||||||||||
Sbjct: 227 aaacagattctgaaattactatcttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 846
Length adjustment: 10
Effective length of query: 434
Effective length of database: 836
Effective search space: 362824
Effective search space used: 362824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
