Query= MSMg01no408_h07.b1 MSMg01no408_h07.b1 CHROMAT_FILE:
MSMg01no408_h07.b1 PHD_FILE: MSMg01no408_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:26 2005
(521 letters)
>mm_chr3_68658300_68659220
Length = 921
Score = 882 bits (456), Expect = 0.0
Identities = 477/484 (98%)
Strand = Plus / Minus
Query: 38 aaaacaaaacaaaacaagaagaccagtagaagtgagtcaggatgactttcaagactagat 97
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 aaaataaaacaaaacaagaagaccagtagaagtgagtcaggatgactttcaagactagat 845
Query: 98 tataaaatacaatatggctttcctttcccccttcttttccctacctctccctttctccca 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tataaaatacaatatggctttcctttcccccttcttttccctacctctccctttctccca 785
Query: 158 ttcccttattctctctttcctctcctcccccttcccctcccctttcttcttccctctctc 217
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 784 ttcccttattctctctttcctcttctcccccttcccctcccctttcttcttccctctctc 725
Query: 218 tctagactggacatagtgaaagccccaggtcagtggtagttgacagccctgctcagttaa 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tctagactggacatagtgaaagccccaggtcagtggtagttgacagccctgctcagttag 665
Query: 278 gtctttagtcagtatctggcatcatgtgcgtgaactagcctgataagaaacctgccccca 337
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gtctttagtcagtatctgggatcatgtgcgtgaactagcctgataagaaacctgccccca 605
Query: 338 catcccctgaggtcactggggaacagccatactgcaccaatgtcacaaggctgcattcca 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 catcccctgaggtcactggggaacagccatactgcaccaatgtcacaaggctgcattcca 545
Query: 398 gttcctggcccagaaaaccaagggacagaatacgtagctattattattttaaggcgattt 457
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 544 gttcctggcccagggaaccaagggacagaatatgtagctattattattttaaggcgattt 485
Query: 458 accaggaaactgcaggaatcaaagtgagttctcccacctcaactaagtctgagaacacct 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 accaggaaactgcaggaatcaaagtgagttctcccacctcaactaagtctgagaacacct 425
Query: 518 gagg 521
||||
Sbjct: 424 gagg 421
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_h07.g1 MSMg01no408_h07.g1 CHROMAT_FILE:
MSMg01no408_h07.g1 PHD_FILE: MSMg01no408_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:26 2005
(460 letters)
>mm_chr3_68465825_68466684
Length = 860
Score = 777 bits (402), Expect = 0.0
Identities = 449/466 (96%), Gaps = 7/466 (1%)
Strand = Plus / Plus
Query: 1 agaaaagtgagggtttttcttttcttttcttttct---ttctttcttctttctttctttc 57
|||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 196 agaaaagtgagggtttttctttccttttc-tttctttcttctttcttctttctttctttc 254
Query: 58 tttctttctttctttcttt-ttt-ttt-ttttttttaaccatatctctacactgagggca 114
|||| |||||||||||||| ||| ||| |||||||| ||||| |||||||||| ||||||
Sbjct: 255 tttccttctttctttctttctttctttctttttttttaccatgtctctacactaagggca 314
Query: 115 aggtttgttccaaaattcagactacttttcatgggaagacgctgtcaggagtgtcttaac 174
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 315 aggtttgttccaaaattcagactacttttcatgggaagacgccgtcagaagtgtcttaac 374
Query: 175 agttcttaacatctcatcatttatctggtaaggggtgttaagtgcgtttcctggatatga 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 375 agttcttaacatctcatcatttatctggtaaggggtgttaagtgcgtttcctggatttga 434
Query: 235 aggaaggtggtctcggttgattcagcagtatctgctaaaattaggcattatctcagctgg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aggaaggtggtctcggttgattcagcagtatctgctaaaattaggcattatctcagctgg 494
Query: 295 atctcccacatttgtggcaggaggagatctttagtgagaggcaaaaggttctgattcttg 354
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atctcccacgtttgtggcaggaggagatctttagtgagaggcaaaaggttctgattcttg 554
Query: 355 cattttttacaacccatttctggctaagagtgacttcactggacaatcgcaaccgcaaag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cattttttacaacccatttctggctaagagtgacttcactggacaatcgcaaccgcaaag 614
Query: 415 aaaagaggaaacactcttcctgtcccgggcgtcctgagggaaagag 460
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 615 aaaagaggaaacactcttcctgtcccgggcatcctgagggaaagag 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
