BAC Information

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BAC

Clone NameMSMg01-408I02
Chromosome3 (Build37)
Map Location 66,810,719 - 66,811,035
singlet/doubletsinglet
Overlap geneRsrc1
Upstream geneLOC625048, Veph1, Tpi-rs2, Ptx3, LOC625115, Shox2
Downstream geneMlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408I02.T7 (MSMg01no408_i02.b1)MSMg01-408I02.TJ (MSMg01no408_i02.g1)
ACCAG506208AG506209
length729726
length of high quality
(start - end)		611 (49 - 659)482 (79 - 560)
definitionCHROMAT_FILE: MSMg01no408_i02.b1 PHD_FILE: MSMg01no408_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:30 2005CHROMAT_FILE: MSMg01no408_i02.g1 PHD_FILE: MSMg01no408_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGGAAAC
CAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGTCCACTCTCTCCATACCTGTTCAACAT
TGTTCTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAAGAGGAAGTCAAAAAATCACTTTTTGCAGATGAT
ATGATAGTATATATCAGTGACCATAAAAATTCCATCAGAGAACTCCTAAA
ACTGATAAACAGCTTCTGTGAAGTAGCAGGATATAAAATTAACTCAAACA
AGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTAGG
CGTGACTCTAACTAAGGAAGTCAAAGATCTGTATGGTAAAAACTTCAAGT
CTCTGAAGAAAGAAATTAAAGATCTCAGAAGATGGAAAGATCTCCCATAC
TCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATTCCCATCAAAATTCCAACTCAATTCTTCA
ACGAATTATAAAGAGCAATCTGCAAATTT

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATATATCCTTTATGTAACCT
CACTATAGTTAACAAATAGATTATTAACAATGTCATTTAAGTCTCATTCG
TTTTCTGAACAGTGCCCTTTCTCATCTTTTATAACCTTTATCCTTCTAAA
GAATATTTAACTATTCTCTATAATGTTCCTCATTTCCCTCAGTTTGGGTT
TCTATGAATTTTTTGTCTTCATGATTAGGATGAGTTTTGGTTTTGGTATG
AATATCAACTGGTGAGTGTTCTTTAGTGTTAGATATCAAGGCATTCACGA
TGTTGCTATCATTGGTGGTATTACCTTTGGCAGACATTGACCTATGAATT
TTTAAAGTATACCTCGTCTGAAATAATCATTTGAAATTTGCTTAATGATA
TTTCTAATTTTTGTGGATGGCAGCAGGTAGAGGTGTAGGTTCATGTATTT
TAATATAGAGGTCAAACACCCTTATAGTACTAGAGTTTCAGGTTATGTTT
TGCTTTTAAGATTTATTTTGTTTTGCTTGCACATATGTATATGTGCCTGG
TGTCTTTGGGCCAGAAGAGGGTATTGGATTCCCTGGAACTGGAATTATAT
ATGATTGTGAATCTCCCACTGGGTCTGGCTAGCCTAACTAAATTCTCTGT
AAGATCATCTAGCCTTTTTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_i02.g1 MSMg01no408_i02.g1 CHROMAT_FILE:
MSMg01no408_i02.g1 PHD_FILE: MSMg01no408_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:30 2005
         (482 letters)



>mm_chr3_66810354_66811235
          Length = 882

 Score =  582 bits (301), Expect = e-170
 Identities = 313/317 (98%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 167 tgggtttctatgaatttttt-gtcttcatgattaggatgagttttggttttggtatgaat 225
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgggtttctatgaatttttttgtcttcatgattaggatgagttttggttttggtatgaat 425

                                                                       
Query: 226 atcaactggtgagtgttctttagtgttagatatcaaggcattcacgatgttgctatcatt 285
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 426 atcaactggtgagtgttctttagtgttaggtatcaaggcattcacgatgttgctatcatt 485

                                                                       
Query: 286 ggtggtattacctttggcagacattgacctatgaatttttaaagtatacctcgtctgaaa 345
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 486 ggtggtattacctttggcagacattgacccatgaatttttaaagtatacctcgtctgaaa 545

                                                                       
Query: 346 taatcatttgaaatttgcttaatgatatttctaatttttgtggatggcagcaggtagagg 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 taatcatttgaaatttgcttaatgatatttctaatttttgtggatggcagcaggtagagg 605

                                                                       
Query: 406 tgtaggttcatgtattttaatatagaggtcaaacacccttatagtactagagtttcaggt 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 606 tgtaggttcatgtattttaatatagaggtcaaacacccttatagtactagaatttcaggt 665

                            
Query: 466 tatgttttgcttttaag 482
           |||||||||||||||||
Sbjct: 666 tatgttttgcttttaag 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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