Query= MSMg01no408_i12.b1 MSMg01no408_i12.b1 CHROMAT_FILE:
MSMg01no408_i12.b1 PHD_FILE: MSMg01no408_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:32 2005
(510 letters)
>mm_chr3_36819469_36820378
Length = 910
Score = 934 bits (483), Expect = 0.0
Identities = 499/507 (98%), Gaps = 6/507 (1%)
Strand = Plus / Plus
Query: 7 gaattcaggagttttcc---gatttttatctttgtattttctaatttgttatgtttctaa 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaggagtt---cagtgatttttatctttgtattttctaatttgttatgtttctaa 263
Query: 64 ggacagtttttatagttattcatacttatggtatttaataatgtcacacatatgtaaatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggacagtttttatagttattcatacttatggtatttaataatgtcacacatatgtaaatg 323
Query: 124 actatttatatgaagacaaatttaatttaatgcctaaatagagttggtgcctgctgtgac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actatttatatgaagacaaatttaatttaatgcctaaatagagttggtgcctgctgtgac 383
Query: 184 ctgaatttctatttcagggacttagaatgttatatgtagtgggagctttccattgagtct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgaatttctatttcagggacttagaatgttatatgtagtgggagctttccattgagtct 443
Query: 244 tttcccaaattgtaatttatgctttctttattgtttttctttgctttcttcattattggt 303
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 tttcccaaattgtaatttatgctttctttattgttggtctttgctttcttcattattggt 503
Query: 304 ctttcaggttttttttttgttgttgttgttaaatattgcagatactgtattatgattatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttcaggttttttttttgttgttgttgttaaatattgcagatactgtattatgattatt 563
Query: 364 tgattttatataaatgcagtgaaattgtatataacttctttgaagaccttctaaacagtt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgattttatataaatgcagtgaaattgtatataacttctttgaagaccttctaaacagtt 623
Query: 424 tattttttcctggcacactaatcttttcacctctatctatttattccagtgtcagaaatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tattttttcctggcacactaatcttttcacctctatctatttattccagtgtcagaaatg 683
Query: 484 gaagaaacaatgctatctgtattaagg 510
|||||||||||||||||||||||||||
Sbjct: 684 gaagaaacaatgctatctgtattaagg 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_i12.g1 MSMg01no408_i12.g1 CHROMAT_FILE:
MSMg01no408_i12.g1 PHD_FILE: MSMg01no408_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:32 2005
(496 letters)
>mm_chr3_37059977_37060872
Length = 896
Score = 951 bits (492), Expect = 0.0
Identities = 495/496 (99%)
Strand = Plus / Minus
Query: 1 acagacaaaaacaggggaagcacaaataaacatgcaaaagggattttaactcactgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 acagacaaaaacaggggaagcacaaataaacatgcaaaagggattttaactcactgataa 637
Query: 61 tgagagagattaaagtcagaataacaataaaatcaatcaaacaaacaaaaaaaccaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgagagagattaaagtcagaataacaataaaatcaatcaaacaaacaaaaaaaccaaaaa 577
Query: 121 accgtttccctccatcacattgacaaagattggaagagccaacaatatggggtctcgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 accgtttccctccatcacattgacaaagattggaagagccaacaatatggggtctcgtca 517
Query: 181 gaggtggggagccctcctcatagcttgcatattgatattcaaaagagcgcatctctgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaggtggggagccctcctcatagcttgcatattgatattcaaaagagcgcatctctgctg 457
Query: 241 gacctgtctttactgaccaactgcccccaccccaacacacatgcgaagcagaacaacaaa 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gacctgcctttactgaccaactgcccccaccccaacacacatgcgaagcagaacaacaaa 397
Query: 301 aagaaatcttccggtttgagatctctgcaaacacgttcagttcagtaagctttctcctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagaaatcttccggtttgagatctctgcaaacacgttcagttcagtaagctttctcctct 337
Query: 361 aagcaaaacacagcggccctgactgaacaagccctttgagaattattataaaaaccttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aagcaaaacacagcggccctgactgaacaagccctttgagaattattataaaaaccttcc 277
Query: 421 cacaggcatgcacatgaggcaatcttctgcatgactaaaacagatatgtcatggagggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cacaggcatgcacatgaggcaatcttctgcatgactaaaacagatatgtcatggagggga 217
Query: 481 aaagacagttttgagt 496
||||||||||||||||
Sbjct: 216 aaagacagttttgagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
