AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATGCAATCACAGCAACCTCCAAAGAGAGGGCACTTTCTCCAGGAGCC
TCCGGAGAACTTCCCGTGTTTTTAGGCCAAAGTCTCAGATACAAACACCA
AGACAGAGATCGCTCCATAAAGTCACAAGACTTATTTAATGCTGTAGACA
GCAGACAGGGGTGGGGACTCTGAGGAGAGTTCAGGTCCCAGCACCAGAAG
GAGAAAGCATGGTGGAGTCTCTGAAGAGAAGAATCAAAGTCATATGGCAG
CAATGGTGGTCTCCTCTTATACCTTTCTGTGGATAGAGAAGCTTCACAGC
ACATGCCTGCAACCAGGTGCCAAGGAACAGCCTTGGCTTGGAGAGGGGTT
CTGAGAGAAAGGGCGTCTGGAAGCAGCTAAACAAATGACTTGAAGTCAAT
CGTGGGTCCAAGCTGATGGCCTGTGTTCTGCTCGAGACAGCTTTCCAGAC
TGCTCTCTCTATGTTCTGCTTGAGACTGCTTTTTTTCTATTCTAAAACTC
TCTAGAAATTTTTCTCTTGGAAATCAAAGGCTCAGTTTTATTTGCCTTCA
ATCCGGTTTTTTTCCAGTTCCCTTTGGTTTCCTTAAAAAATCCCCCTTGG
AGAGGGCCCCCTTCCAATTCTAAAAGTAATTTTTGCCTTTTACCCCTAAC
TTATCTTGCTGCGCTCCCGCCCCATTTCTCTTCCCTTCTTTGTTTTCCCC
TTTCCTTTG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCTAAACTACAGGAAAAGCCAGACAA
GGCAGTTTGTACATCTGTAATCCCAGCACACTTATGGAGCGATGGGAGGC
AGAGACAAGAGAATCTCTAGAAACTAGTAGGCCAGTTGTCTTGACATAAA
TGGCTGTAAATAACAATGAGGCTTTGCTTTTTAAAGTGGAAATCAAGGAG
AGAAATCCAAGGTTGTCTTCTGACCCCAACATAAGTGCTGGTGCATGTAA
GTGCTCACCCACACTTACAAATACTTACACGTAGGCTACGACGCACGCGT
GCACACACACACTCGTGCACACACACACACACACACACACACACACACAC
ACACACACAAAATCACAAGTGTAGATTTATGTGTATCTTTATAGAATTGA
TTTAGCCTTCCTATAATTTAGGTTCATAGAATCTAAGTTTTCACAATAGC
GTTTTGCATTTTAAAAGAATAGGTATGCAGGCCTCTGCGAATTCCGCTTT
TTTGGCCCCAAAGGGGCTCATTCCACGTAGCCCCGACCACTCTAATATCC
GGTTCTGGCTGAATCACCTGCTTCTATGGCTACCCTCTCCACTTTTCCTC
ATGCTGTTCCCCATATTCCCTTCACCACCTTTCCCCTCCCCCCCCCTCCC
TTTAATTTTCTGCTTTCCCTTCGCTTTTCTCTTCTTCCCTTCCCACTATC
ACCCTCCTCTCCCCTCTCCTTCTCTCTTTTTG

Query= MSMg01no408_p12.b1 MSMg01no408_p12.b1 CHROMAT_FILE:
MSMg01no408_p12.b1 PHD_FILE: MSMg01no408_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:08 2005
         (427 letters)



>mm_chr3_51435483_51436309
          Length = 827

 Score =  781 bits (404), Expect = 0.0
 Identities = 419/424 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatgcaatcacagcaacctccaaagagagggcactttctccaggagcctccgg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaattcaatgcaagcacagcaacctccaaagagagggcactttctccaggagcctccgg 466

                                                                       
Query: 64  agaacttcccgtgtttttaggccaaagtctcagatacaaacaccaagacagagatcgctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agaacttcccgtgtttttaggccaaagtctcagatacaaacaccaagacagagatcgctc 406

                                                                       
Query: 124 cataaagtcacaagacttatttaatgctgtagacagcagacaggggtggggactctgagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cataaagtcacaagacttatttaatgctgtagacagcagacaggggtggggactctgagg 346

                                                                       
Query: 184 agagttcaggtcccagcaccagaaggagaaagcatggtggagtctctgaagagaagaatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agagttcaggtcccagcaccagaaggagaaagcatggtggagtctctgaagagaagaatc 286

                                                                       
Query: 244 aaagtcatatggcagcaatggtggtctcctcttatacctttctgtggatagagaagcttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaagtcatatggcagcaatggtggtctcctcttatacctttctgtggatagagaagcttc 226

                                                                       
Query: 304 acagcacatgcctgcaaccaggtgccaaggaacagccttggcttggagaggggttctgag 363
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acagcacatgcctgcagccaggtgccaaggaacagccttggcttggagaggggttctgag 166

                                                                       
Query: 364 agaaagggcgtctggaagcagctaaacaaatgacttgaagtcaatcgtgggtccaagctg 423
           |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 165 agaaagggtggctggaagcagctaaacaaatgacttgaagtcaatcgtgggtccaatctg 106

               
Query: 424 atgg 427
           ||||
Sbjct: 105 atgg 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)