Query= MSMg01no409_b09.b1 MSMg01no409_b09.b1 CHROMAT_FILE:
MSMg01no409_b09.b1 PHD_FILE: MSMg01no409_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:19 2005
(521 letters)
>mm_chr3_32973868_32974790
Length = 923
Score = 948 bits (490), Expect = 0.0
Identities = 512/520 (98%), Gaps = 2/520 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtacatgttcctgaagaacagaggaccccctccttctccacctgctcagcct 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ggaattctgtacatggtcatgaagaacagaggaccccctccttctccacctgctcagcct 664
Query: 64 ggagagcctgaagcagggga--ctgtcacacttggagaactcggcaccccatgcagctgt 121
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggagagcctgaagcaggggactctgtcacacttggagaactcggcaccccatgcagctgt 604
Query: 122 gatgccctgattaagctcgcagtaagcataagctcattagcaatttctacacaaaagatt 181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 603 gatgccctgattaagctcgcagtaagcataagctcattagcaatttcttcacaaaagatt 544
Query: 182 gatcaatgagaagtggcttcataaaaagaaggcagattatttaccatgcgtatgcactgg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gatcaatgagaagtggcttcataaaaagaaggcagattatttaccatgcgtatgcactgg 484
Query: 242 cataatcaaaaagtcatttctatagaccaatcaattccatcttttctgcaaagttatttt 301
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cataatcaaagagtcatttctatagaccaatcaattccatcttttctgcaaagttatttt 424
Query: 302 tcatcaacaaatattgtaaatgaggggccacatttcccgttaggttaaacataaaatttc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcatcaacaaatattgtaaatgaggggccacatttcccgttaggttaaacataaaatttc 364
Query: 362 tggaataaagacgggatgaccctgtatttattgtcctcccaaatagtctcacatgtatca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tggaataaagacgggatgaccctgtatttattgtcctcccaaatagtctcacatgtatca 304
Query: 422 tggactcaaaacttaaccctaaaggtttgatacttcaaaggggaagagtcacagtaacgc 481
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 303 tggactcaaaacttaaccctaaaggtttgatacttcaaaggggaagactcacagtaacgc 244
Query: 482 acaatgtctttacaaacgcacatcgtaaactatttcttaa 521
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 243 acaatgtctttacaaactcacatcgtaaactatttcttaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 923
Length adjustment: 10
Effective length of query: 511
Effective length of database: 913
Effective search space: 466543
Effective search space used: 466543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_b09.g1 MSMg01no409_b09.g1 CHROMAT_FILE:
MSMg01no409_b09.g1 PHD_FILE: MSMg01no409_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:19 2005
(329 letters)
>mm_chr3_32811771_32812495
Length = 725
Score = 520 bits (269), Expect = e-152
Identities = 308/329 (93%), Gaps = 15/329 (4%)
Strand = Plus / Plus
Query: 1 acctgtgtagatgagggtagccttgaacttctgatcttcctgcttccatttcccaagttc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 acctgtgcagatgagggtagccttgaacttctgatcttcctgcttccatttcccaagttc 271
Query: 61 tatgtttacaggcatgtgctaccatgcccaacctgccttgttgtcataaataggatttat 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 272 tatgtttacaggcatgtgctaccatgcccaacctgccttgttgtcttaaataggatttac 331
Query: 121 acatttggcgtcatttggaggcagttggtctccagttggtctccaggtctggaggacaaa 180
| ||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 332 atatttggcgtcatttggaggcagttggtctccag-----------gtctgaaggacaaa 380
Query: 181 gcccctgcagttgtacttagactcatttctattcctagttgcataggttgcagcactgcc 240
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gc---ta-agttgtacttagactcatttctattcctagttgcataggttgcagcactgcc 436
Query: 241 ttgcagcagctgttaggcttataaatcttgcatttgagcaagtcgaatgtagtggcaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgcagcagctgttaggcttataaatcttgcatttgagcaagtcgaatgtagtggcaact 496
Query: 301 gaggcatgagggctttatttttctcccag 329
|||||||||||||||||||||||||||||
Sbjct: 497 gaggcatgagggctttatttttctcccag 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 725
Length adjustment: 9
Effective length of query: 320
Effective length of database: 716
Effective search space: 229120
Effective search space used: 229120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
