BAC Information

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BAC

Clone NameMSMg01-409B18
Chromosome3 (Build37)
Map Location 89,081,225 - 89,081,650
singlet/doubletsinglet
Overlap geneEfna1
Upstream gene1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1
Downstream geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409B18.T7 (MSMg01no409_b18.b1)MSMg01-409B18.TJ (MSMg01no409_b18.g1)
ACCAG506672AG506673
length795781
length of high quality
(start - end)		430 (49 - 478)391 (75 - 465)
definitionCHROMAT_FILE: MSMg01no409_b18.b1 PHD_FILE: MSMg01no409_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:21 2005CHROMAT_FILE: MSMg01no409_b18.g1 PHD_FILE: MSMg01no409_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCCCAAGTCTCTGCCAGGGAGAGGCTCAGCAGAGCTGCCTGC
CAACTTGCTTTCAACCCGAGTCCTTGGCATGGGTGGTGCCCATGGTGATG
GTGGGGTTCCACGGTGGCCACCCACTACCCAGTCATCATGACCCCTTAGA
GGCCTGGCCTTGCAACAGCTTGCAGCCTCTAAAATGAGACTTACTGGGCC
CCTCCCCCACGGGGGGGGGTAGAGAGAGAGAAGCAGAGGGAGGCTTTTAA
AATTCCTCTCTGGAGAGATAAACATATAATCCATTTCAGAACAGGTATTT
CAGCTCTGGGCCTGGCGTCTTTCCCCTATTCCCGTGATGGGCACTGACTC
ACTCCTGCCTCATCCACCTCGCTACCCGCCCAGGTGCTCTTGAGAGCCTG
TGAAATTTTACCTCGTTCAAAGTGAGCAGCCCCCATGACCCCATTGCAGT
CCAGGACTGGTTTGCCCCAGTGTTGGTCTCCTGTTAAAAGTGTTCGAAAA
ATCTTGATTTTTGAACAATCTGTATCTCCACGATATATGCCTATATTTAT
ATTGTAATCTTTTTACGATCCTGTCTTTTCTTTGTAACTCGGTTGTTATC
TCCTTATAGGCTCTACTTCTTGTATTTCTTATTTCATCTTATTACTGCCC
TGTTTCTCCTCTTTTTTCACATCTTTTTCCATTGCCTTTTCTTTACTTTC
TCAGTTTCTTTTTCTTTCCCTATTTTCTCTACTTATCAAATCAAA

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGACGCGGGTAAAAAGGCCAGCTG
GGATGGCCCCAAAGCATGGGGACTAAGACTGTATCGATCCACAGGGACCG
ACCCGGTAACCCTGTTCTCTTTGACCCGCCAGGTCCTCAATGTAGGACCC
CGCGTCCCCATTGGGCCTAATCCCATGATCACTGAACAGCTACCCCCCTC
CCAACCCGTGCAGATCATGCTCCCCAGGCCTCCTCATCCTCCTCCTTCAG
GCGCGGCCTCTATGGTGCCTGGTGCTCCCCCGCCTTCTCAACAACCTGGG
ACGGGGGACAGGCTGCTAAACCTAGTAGAAGGAGCCTACCAAGCACTCAA
CCTCACCAGTCCCGACAGAACCCAAGAGTGCTGGCTGTGTCTGGTATCGG
GACCCCCCTACTACGAAGGGGTGGCCGTCCTAGGTACTTACTCCAACCAT
TCCTTTGTCCCGGTTTACTGCTCCTGTATCTCCCCTCTCTTTCTGATCCT
GGTCTAAATGATCTTTCCTGTTATTCTGCTTTTCATATTTTTCCCCAATC
CCATAGCATCCGCTAAATTCTTTCTGAAAATGATTTCTCTTCGTCTTCTT
TTCTTGTACATTCTTTTCTTGACTTTACAACCTTCTTTATTTTTTTTTTT
CTTTTTTTATTCTTCCTTTTCTTTTATTTTTTTTTCCCTCTTTCCATATA
TCCTTTCCCTACTATTCTTTCCTTTCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_b18.b1 MSMg01no409_b18.b1 CHROMAT_FILE:
MSMg01no409_b18.b1 PHD_FILE: MSMg01no409_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:21 2005
         (430 letters)



>mm_chr3_89081021_89081850
          Length = 830

 Score =  750 bits (388), Expect = 0.0
 Identities = 418/428 (97%), Gaps = 4/428 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccccaagtctctgccagggagaggctcagcagagctgcctgccaacttgctttc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccccaag-ctctgccagggagaggctcagcagagctgcctgccaacttgctttc 263

                                                                       
Query: 65  aacccgagtccttggcatgggtggtgcccatggtgatggtggggttccacggtggccacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacccgagtccttggcatgggtggtgcccatggtgatggtggggttccacggtggccacc 323

                                                                       
Query: 125 cactacccagtcatcatgaccccttagaggcctggccttgcaacagcttgcagcctctaa 184
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 cactacccagtcatcatgaccccttagaggcctggccttgcaactgcttgcagcctctaa 383

                                                                       
Query: 185 aatgagacttactgggcccctcccccacggggggggg-tagagagagagaagcagaggga 243
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 aatgagactttctgggcccctcccccacggggggggggtagagagagagaagcagaggga 443

                                                                       
Query: 244 ggcttttaaaattcctctctggagagataaacatataatccatttcagaacaggtatttc 303
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 444 ggcttttaaaattcctctctggagagataaacatagaagccatttcagaacaggtatttc 503

                                                                       
Query: 304 agctctgggcctggcgtctttcccctattcccgtgatgggcactgactcactcctgcctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 agctctgggcctggcgtctttcccctattcccgtgatgggcactgactcactcgtgcctc 563

                                                                       
Query: 364 atccacctcgctacccgcccaggtgctcttgagagcctgtgaaattttacctcgttcaaa 423
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 564 atccacctcgctacccgcccaggcgctcttgagagcctgtgaaattttacctcgt-caaa 622

                   
Query: 424 -gtgagca 430
            |||||||
Sbjct: 623 agtgagca 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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