TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCAGAAAATCTCTATGCATTGGTAACTTAGGTGCCTGTTACCA
CATTCAAAACTCTACAGACAATGTGGATGAGAATAAATCTGTTGAATGTC
AAATAAAGTTGCAGAACTGCCTCCCCACCTCCCAAAAGAGAGTACGGCCT
GAGAAATGCATAGAAAGAACCCAGTTTTGTGTGAGGTTCAGTTGAAGAAA
AATGTAGACTGCACTACCATGCCCAAGTTATCGCCTCCAGATTTATAAGT
CAAAATTCTAAATTCAATATGAAATTTGTTTTTTACAACTCTTTATCCTC
TTGTTAAGGCAAAGACAATGTCTAATTTTATAAACAGGAATGTCTATAAT
ATGAGAAAGCCCAGTACATGAAAACAAGAAAAGTATAAATCCACTCTAAT
CTCACCAAAAAAAAAAAAAGAAAAACTGGCAAAGTATCACACTGATGTAA
GAATGATTAATAATAGCCGCAATATCTTCTTAACAACAAAAATTCTGAAA
AATCTCCAAGGCCGTTTTTGTATATTAAATGGCTCCAAGATACTTGATGA
ATGAGCTGGAAATCTTTAAGTGACAACACTGAGAATTTTTCAGGTAAGAA
TTCCTAAAGTTCAGTCTCTAAAGGTCTGATGTTTTCATCAAGGAAGACCC
CCGTGGAATATCTCACTTAGAAAAACTCTTGTGTTTCTGCTTCAAACTTC
TGTGGTGGGTTGGTACTATGTGCGCG

CGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAAGAAGTAGGTTACAAGAGGTA
TGCTGGCAAGGAAGTGTAAACAGGTGAAGAAGGAGAAAGAGAAAAAAGTT
GATGAAGAAGAAGGAGGAAGAGGAGGAAGAGAGTGTCCTTATATAGGTCA
CCAGCAGAGAGTATGGCCCAGATTAAATTTGTGTACTAATACACCTGGAT
TTGGAACTTGCCTGGGACAAAAAACAAAAAACAAAAGAACTCCAAACAAA
CAAACAAACAAACAAACAAACAAAAAACTTTTTTTTAAAGATCCAGATCA
GAGGGCTATGTCTTCCAGCCTCAAGACCTGGATCACAGGTGTGCCCTCCA
TTCTGGATTGTACTTCATTTTANATGTAGTCAAGTTGACAACTAGGAATA
GTCCTTGTGACCCTTATTGTCATAAATTGGATCATTGTATCTCATTGTTG
TCTTAATAATCCTCCAGTGGTTGATCTTGACCTCTGCCCAGCTACTCTGG
CACCTCTGTAGTTTTTGGACTTCCCCCCCACCTCTTTGACCCCTACCCTT
GTTTATCTTTGTTCCCGGTTCGTTTCCTTCTCCTCGGCTTCTTTTTTGAC
CTGCTTCTTCTGTGTTTCTTTTTTTTTTTCTTTTCCCCATTTTCTCCTCC
CTCTTCTTTTCTCCGTCTCTCTCCTATCTTTTTTTCATTCCTTTTTCCTT
CTCTCTTTCCTTTCCTTACTTCCCTTCTGCCCTCCTTTCTCCCTN

Query= MSMg01no409_f13.b1 MSMg01no409_f13.b1 CHROMAT_FILE:
MSMg01no409_f13.b1 PHD_FILE: MSMg01no409_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:40 2005
         (586 letters)



>mm_chr3_39026756_39027740
          Length = 985

 Score = 1056 bits (546), Expect = 0.0
 Identities = 573/586 (97%), Gaps = 9/586 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagaaaatctctatgcattggtaacttaggtgcctgttaccacattcaaaac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gaattcatcagaaaagctctatgcattggtaacttaggtgcctgttaccacattcaaaac 726

                                                                       
Query: 65  tctacagacaatgtggatgagaataaatctgttgaatgtcaaataaagttgcagaactgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tctacagacaatgtggatgagaataaatctgttgaatgtcaaataaagttgcagaactgc 666

                                                                       
Query: 125 ctccccacctcccaaaagagagtacggcctgagaaatgcatagaaagaacccagttttgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ctccccacctcccaaaagagagtacggcctgagaaatgcatagaaagaacccagttttgt 606

                                                                       
Query: 185 gtgaggttcagttgaagaaaaatgtagactgcactaccatgcccaagttatcgcctccag 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 605 gtgaggttcagttgaagaaaaatgtagactgcactaccatgcccaggttatcgcctccag 546

                                                                       
Query: 245 atttataagtcaaaattctaaattcaatatgaaatttg----ttttttacaactctttat 300
           ||||||||||||||||||||||||||||||||||||||        |||||||||| |||
Sbjct: 545 atttataagtcaaaattctaaattcaatatgaaatttgggga----ttacaactctctat 490

                                                                       
Query: 301 cctcttgttaaggcaaagacaatgtctaattttataaacaggaatgtctataatatgaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cctcttgttaaggcaaagacaatgtctaattttataaacaggaatgtctataatatgaga 430

                                                                       
Query: 361 aagcccagtacatgaaaacaagaaaagtataaatccactctaatctcaccaaaaaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aagcccagtacatgaaaacaagaaaagtataaatccactctaatctcaccaaaaaaaaaa 370

                                                                       
Query: 421 aaagaaaaactggcaaagtatcacactgatgtaagaatgattaataatagccgcaatatc 480
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaa-aaacactggcaaagtatcacactgatgtaagaatgattaataatagccgcaatatc 311

                                                                       
Query: 481 ttcttaacaacaaaaattctgaaaaatctccaaggccgtttttgtatattaaatggctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttcttaacaacaaaaattctgaaaaatctccaaggccgtttttgtatattaaatggctcc 251

                                                         
Query: 541 aagatacttgatgaatgagctggaaatctttaagtgacaacactga 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aagatacttgatgaatgagctggaaatctttaagtgacaacactga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space:   561600
Effective search space used:   561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)