BAC Information

Click to search

BAC

Clone NameMSMg01-410A07
Chromosome3 (Build37)
Map Location 119,444,766 - 119,445,106
singlet/doubletsinglet
Overlap genePtbp2
Upstream geneDpyd, LOC100043275, LOC100043278
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410A07.T7 (MSMg01no410_a07.b1)MSMg01-410A07.TJ (MSMg01no410_a07.g1)
ACCAG507366AG507367
length763764
length of high quality
(start - end)
249 (78 - 326)341 (78 - 418)
definitionCHROMAT_FILE: MSMg01no410_a07.b1 PHD_FILE: MSMg01no410_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:37 2005CHROMAT_FILE: MSMg01no410_a07.g1 PHD_FILE: MSMg01no410_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGANCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCACCTGTGGACTAACAAATGGCTGAGAAGCACCTGAA
AAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAACAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGT
TCCTCAGAAAATTGAACATAGTACCATTTTTTTTNATTCNNAAGATGGGG
CTTGGGGAGTGGGGGGGGGGGGCCAATTTTTTTTCCCCCCCCCCCCCCTT
TCGGTGTTCTTCTCCTCCCCTTTTATCCCTCTTTTTCTTGTCCTCTCCCT
TTCCCTCTGGCGTCCATCCGACGCTTTTTTTACTTTATCATGTGCCTTTT
CATCTATCATCTTGATCCCCCCTCTCCTCTCTTTCCCGCCTTCGCCCGTC
TTTCCTCTCCCCCTTTTCGCTTTCTCCTCCTTCTCTTTCTCCATCTCTCC
CTCCCTTTCCCTCCTTTCCCCTCCTCTCCTATCCCTTTAATTCCTCCCCT
TACTCTCCCCTGTTTTCCCCTTCTCTTTCTCCCTTATTCTCCCGTCTCCT
CTCTTTTGCTCTGTCGCCACATTTTCCCATTTCCTTCCTTTTTCTCCCGT
TTGTCTGTTTCTG
TTCCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCTGAGAATTCTTTCTGCCTTACTTACAGTCA
CCTTACTTCATACAAATTTTAAATTAACTAGATTGCTATTTTCCTCTCCT
TGTATGACAAAATTATATAAAATTTGACTAGTTGTTTCTCCAGCTCTTCC
CAGTCTGTGTGGCTGTGTGTCTTGTACTTGTGTACAGATATTTTTCTAAA
AGTTAAAATTGAAATTATCAAAGGTTTCTAAAGGGTGTTGTAGTAATTGG
CACATTGATTGTAGATAATTTGGTATTTTGTCTTAATATCACATTAAAAT
ATCACTTTGAAAAGTCTATTGTAGATTTAGTAATTTTCTGTCAGTTCTGT
TAGCATTAACCTAGGGATGTTGATTCAAGCCAGCTCTAATGAGGTAATGT
GTACTCCTTGATAGTATTTAATTAGCTACCCAAGGGTAAAGTTTCGCTAC
TCATCCTCTGATAGACATTTGCCGGACTGATATTCACATCGTCCCTTTTA
TTGTACAGAAATTANACTTTGCCACTGGCTTACATTTCTCTCAATTCGAC
TGACTTCTTTCCATTGCTACTTAACTACACACCATTGTCCTTCCACCTCT
CCTTTGCTACACATCTCATTTTCTCTTTACTCACATCTCTTTGATTATTA
TTCGTTACCCACCCCGTTCCTCCTTCTTACTTTTCCCTTTTCTTCTTATC
TCCCTTTGCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_a07.g1 MSMg01no410_a07.g1 CHROMAT_FILE:
MSMg01no410_a07.g1 PHD_FILE: MSMg01no410_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:37 2005
         (341 letters)



>mm_chr3_119444566_119445306
          Length = 741

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttctgccttacttacagtcaccttacttcatacaaattttaaattaactagattgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tctttctgccttacttacagtcaccttacttcatacaaattttaaattaactagattgct 482

                                                                       
Query: 61  attttcctctccttgtatgacaaaattatataaaatttgactagttgtttctccagctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attttcctctccttgtatgacaaaattatataaaatttgactagttgtttctccagctct 422

                                                                       
Query: 121 tcccagtctgtgtggctgtgtgtcttgtacttgtgtacagatatttttctaaaagttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcccagtctgtgtggctgtgtgtcttgtacttgtgtacagatatttttctaaaagttaaa 362

                                                                       
Query: 181 attgaaattatcaaaggtttctaaagggtgttgtagtaattggcacattgattgtagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attgaaattatcaaaggtttctaaagggtgttgtagtaattggcacattgattgtagata 302

                                                                       
Query: 241 atttggtattttgtcttaatatcacattaaaatatcactttgaaaagtctattgtagatt 300
           |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atttggcattctgtcttaatatcacattaaaatatcactttgaaaagtctattgtagatt 242

                                                    
Query: 301 tagtaattttctgtcagttctgttagcattaacctagggat 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tagtaattttctgtcagttctgttagcattaacctagggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)