BAC Information

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BAC

Clone NameMSMg01-410B07
Chromosome3 (Build37)
Map Location 76,813,449 - 76,972,562
singlet/doubletdoublet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410B07.T7 (MSMg01no410_b07.b1)MSMg01-410B07.TJ (MSMg01no410_b07.g1)
ACCAG507414AG507415
length746759
length of high quality
(start - end)		522 (55 - 576)438 (82 - 519)
definitionCHROMAT_FILE: MSMg01no410_b07.b1 PHD_FILE: MSMg01no410_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:42 2005CHROMAT_FILE: MSMg01no410_b07.g1 PHD_FILE: MSMg01no410_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(76,813,449 - 76,813,966)(76,972,125 - 76,972,562)
sequence
CCCCAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACACTATAGCGTAAAGTAAAATAATTTACTTTTTTC
TTACAATATGGAAATGAAACCACATTGTTTAAAGTAACAGAGGTTCCAGC
ATATTGAGTGGTTATAGAATATATGCAAGAGAAGCAGAAGCAGCAGGATT
ACAAGTATGGGAGTAACAAATTATAATATTCTGGTAAAAACAGCCCATAC
TGCGTGTGGTATAATACTGTTTCAGAGTAGATTAATGCTTGTTATTTTAT
TCACCACTGAATTAATTACTTGTTTTGTTATATCTGAAGATTTCACAAAA
GTAAATTTAAAGAGTAAAGCATTTATTTGGGTCACAGCCATCAGAGTGAG
AAAGTCATGACCTCAGGATCACAAGGACACTTGTCATATTGCATTTGCAG
TCAAGAAACAGTGACAAATTCCAAGAAACAGTGACAAATTCCTCTCACTT
ACCCCCTTTTCATGAGTTCTAATACCACAGCAGTCCATAGAATGGTACAA
TCCATATGCTAGAATGGGGCTTCTTATTAAACAGAAACCTCATACTGCTA
AGAAGTATACCTAGATGGCTAGAGTTCAAACATTGAGATTCTTACTAGCA
TTTACGGTACCCACTGACGTTGAGGTCCCCCCATGCCAGTTATTCATCCT
ACTTACGTTTATATCTCCCCCTTCATTACCCATGGCTGAAAACCCG

NNNNTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATTTCATCATGTTACA
GTCTTAATTTATGTTCATAGCTTCTGGTATTTAATATATACACTATTTCT
AACAGTAATAAGAAGTCCATTTATAACTGTGAACTTTTAAATTATGTTAT
ATTGCCACTTAAATTAGTCTAGAACTGTTTTCTTATATTTATGTCCAGAA
TTTTAAAAGGAAAGATAAACCAACTTTAATGCTGACATTTTAAAAGTAGT
GTAATTTCTCAGACTTGTAAAATTAATTATTTATTAAGGTAAGACTACCA
GCTGAAAGACTAATTGTCTCATGCCTGTAAATTTAATCTTATAATTTAAC
TATTTTCTCAATATATACAAAACAGAAAGAATTAGAATTTCAAAGCTAGA
CTAAAATACATAAGTGTTACAGTAAGTGGGCAATTAACCTGCAAACTGAC
TTGTGTCTGTTTTAAATGTGACTAACCATGGACATAGTCCCCAACTCTGG
AAGGAGGCCCTTTTTGTTACTCACCACAGGGGCCAAACATCTGTTACGAA
CTTTTCATTATCTATTCCCATTTGGGGGAAAACCTTTCCCCAAGAAAACT
AAAACCGGGGTACCACCCTTTCGGCCCATAAATTCCCTCAAAAGGGACTT
TATCCCCCCCCCCTTACTTATTTTTTTACTTACTTCCCCTATTTACCTCC
AATTTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_b07.b1 MSMg01no410_b07.b1 CHROMAT_FILE:
MSMg01no410_b07.b1 PHD_FILE: MSMg01no410_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:42 2005
         (522 letters)



>mm_chr3_76813245_76814166
          Length = 922

 Score =  963 bits (498), Expect = 0.0
 Identities = 513/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacactatagcgtaaagtaaaataatttacttttttcttacaatatggaaatgaa 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacactagagcgtaaagtaaaataatttacttttttcttacaatatggaaatgaa 264

                                                                       
Query: 65  accacattgtttaaagtaacagaggttccagcatattgagtggttatagaatatatgcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accacattgtttaaagtaacagaggttccagcatattgagtggttatagaatatatgcaa 324

                                                                       
Query: 125 gagaagcagaagcagcaggattacaagtatgggagtaacaaattataatattctggtaaa 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 gagaagcagaagcagcaggattacaagtatgggagtaacaaattataatattctagtaaa 384

                                                                       
Query: 185 aacagcccatactgcgtgtggtataatactgtttcagagtagattaatgcttgttatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacagcccatactgcgtgtggtataatactgtttcagagtagattaatgcttgttatttt 444

                                                                       
Query: 245 attcaccactgaattaattacttgttttgttatatctgaagatttcacaaaagtaaattt 304
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 445 attcaccactgaattaattacttgttttgttataacagaagatttcacaaaagtaaattt 504

                                                                       
Query: 305 aaagagtaaagcatttatttgggtcacagccatcagagtgagaaagtcatgacctcagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagagtaaagcatttatttgggtcacagccatcagagtgagaaagtcatgacctcagga 564

                                                                       
Query: 365 tcacaaggacacttgtcatattgcatttgcagtcaagaaacagtgacaaattccaagaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcacaaggacacttgtcatattgcatttgcagtcaagaaacagtgacaaattccaagaaa 624

                                                                       
Query: 425 cagtgacaaattcctctcacttacccccttttcatgagttctaataccacagcagtccat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagtgacaaattcctctcacttacccccttttcatgagttctaataccacagcagtccat 684

                                                 
Query: 485 agaatggtacaatccatatgctagaatggggcttctta 522
           |||||||||| |||||||||||||||||||||||||||
Sbjct: 685 agaatggtactatccatatgctagaatggggcttctta 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no410_b07.g1 MSMg01no410_b07.g1 CHROMAT_FILE:
MSMg01no410_b07.g1 PHD_FILE: MSMg01no410_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:42 2005
         (438 letters)



>mm_chr3_76971925_76972762
          Length = 838

 Score =  801 bits (414), Expect = 0.0
 Identities = 432/438 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatttcatcatgttacagtcttaatttatgttcatagcttctggtatttaatatatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 catatttcatcatgttacagtcttaatttatgttcatagcttctggtatttaatatatac 579

                                                                       
Query: 61  actatttctaacagtaataagaagtccatttataactgtgaacttttaaattatgttata 120
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 578 actatttctaacagtaataagaagtccatttataactgtaaactttttaatcatgttata 519

                                                                       
Query: 121 ttgccacttaaattagtctagaactgttttcttatatttatgtccagaattttaaaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttgccacttaaattagtctagaactgttttcttatatttatgtccagaattttaaaagga 459

                                                                       
Query: 181 aagataaaccaactttaatgctgacattttaaaagtagtgtaatttctcagacttgtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 458 aagataaaccaactttaatgctgacattttaaaagtagtgtaatttctcggacttgtaaa 399

                                                                       
Query: 241 attaattatttattaaggtaagactaccagctgaaagactaattgtctcatgcctgtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 attaattatttattaaggtaagactaccagctgaaagactaattgtctcatgcctgtaaa 339

                                                                       
Query: 301 tttaatcttataatttaactattttctcaatatatacaaaacagaaagaattagaatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tttaatcttataatttaactattttctcaatatatacaaaacagaaagaattagaatttc 279

                                                                       
Query: 361 aaagctagactaaaatacataagtgttacagtaagtgggcaattaacctgcaaactgact 420
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 278 aaagcttgactaaaatacataagtgttacagtaagtgggcaattagcctgcaaactgact 219

                             
Query: 421 tgtgtctgttttaaatgt 438
           ||||||||||||||||||
Sbjct: 218 tgtgtctgttttaaatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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