BAC Information

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BAC

Clone NameMSMg01-410F16
Chromosome3 (Build37)
Map Location 120,340,252 - 120,340,502
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410F16.T7 (MSMg01no410_f16.b1)MSMg01-410F16.TJ (MSMg01no410_f16.g1)
ACCAG507622AG507623
length761829
length of high quality
(start - end)
255 (226 - 480)70 (81 - 150)
definitionCHROMAT_FILE: MSMg01no410_f16.b1 PHD_FILE: MSMg01no410_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:04 2005CHROMAT_FILE: MSMg01no410_f16.g1 PHD_FILE: MSMg01no410_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCTGTGTTCCTGTACTCTCTGCTCTTCATCTGGAGGGGGTAC
AAAAGAAAGACTTATCATTTGCATATTGGAATTCCACGTGCATTTTTATG
CATTTGTGAGTGTCTTCCATTTTCCTTCTCCAATTTGCTTTATAAAAATA
GACCCCCTTCCTTGAGCTAAGGGTGGGAAAAAAAATCCTTGCACAAAATA
ATCTGATGTGTTTATATTTGAGTTTCTAAATATAATTCATACTATGTTCA
TCTATCATGGGCTCATTTATCATTTATTCTTTGTAGTGTGGTTACAATTA
CAACATTCTGGAAGAAAGGCAGCTTTTCTGACTCCTAAATGCCCCTGGGT
CTTTCATGGCTCGCTGAGCAGTTATAAATGAAATACATTTAACTCAATGG
GTTGGAGATTCCCGCAATGCAATTTCAGTTTACAGGTAAAGCTGGTTATC
ACTACTAGCTGATAAACTGTCGCTGGCATAGCCATTTACCAGGAACTGCT
TTCATTTTTCGGCGCTCCTTATATTGACTCATATTCCTCTAATACGGCTT
GCAATTTACGTTTTCTCACATTACTATCCATGGTCGCGTACTTCATCCCT
TTCTAATCTCTTGTCCACTTCAGTCGTATTCCATGCTTTTGTTCTTGCAC
CACTGCATCCCTTTCTTCGCTCTTTCTCCCCCTTTCTCATTTTTTCTGTC
TCCTTCCCCCN
NCCACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGCTTTTTAATAATGA
GCTAGGAGGTGGAGTTCTTAGAAAGTCACTGGCACATGGATGAATATAAT
GCTGGCGTGACGAGGGTTGCATGCCCCCGCCCTCCCCCCTCCCTCCCTCC
CCCCTCCCCCCTCCCCCCCCCTTCCCCCCCTCCTCCCCCTCCCTTCTCTC
CCCTTCCCTTCTTTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCTCC
CCTTTTACCCCCCCCCCTCTCCTCCCCCCTCTTTTTTTTTTCACCCCGCT
TCCCCCCCCCCCCCCCCCATCCCCCCTTCCTTTCTCCCCCCCTTCCCCTC
CTCTCCCTCTCCCCTCCCCTCCCCCTCTCTCCCCTCCCCCCTCCCTTCTC
CCCCTTTCCCTCCCCTTCTTCCCTCCCCTCCCCCCCTTCTCTTCCCCCCC
TCCCCTCCCTCCCCCCCTTCTCCCCCCCCTTTTTCCCCTCCCCTTCCCTC
CCCCTTCCCTTCCCCCCTTCCCCCCCCCCCTTTCTCCTCCCCCCCCCCCT
CCCCCTCCCCCCCCTCCCCCTCTTCCCCTCCTCCCCACCACCTTCCTCCC
TCCTCCCCCCCTCCCTCCCCCCTTCCTTCCCCCTTTCTCCCCCCCCCCCT
CCCCTTATCTCTCCCCCCCTCCCTCCCCCCTCTCCCCCCCTCCCCTTCCC
CTTCCCTCTCCCTCCCCCCCCTTCTCTTCCCCCTCCCCCCCTTCCTTTAT
CCCCCTTCTTATTCTCCCCATCTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_f16.b1 MSMg01no410_f16.b1 CHROMAT_FILE:
MSMg01no410_f16.b1 PHD_FILE: MSMg01no410_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:04 2005
         (255 letters)



>mm_chr3_120340048_120340702
          Length = 655

 Score =  485 bits (251), Expect = e-142
 Identities = 251/251 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaaaaatccttgcacaaaataatctgatgtgtttatatttgagtttctaaatataattca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaaaaatccttgcacaaaataatctgatgtgtttatatttgagtttctaaatataattca 264

                                                                       
Query: 65  tactatgttcatctatcatgggctcatttatcatttattctttgtagtgtggttacaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactatgttcatctatcatgggctcatttatcatttattctttgtagtgtggttacaatt 324

                                                                       
Query: 125 acaacattctggaagaaaggcagcttttctgactcctaaatgcccctgggtctttcatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaacattctggaagaaaggcagcttttctgactcctaaatgcccctgggtctttcatgg 384

                                                                       
Query: 185 ctcgctgagcagttataaatgaaatacatttaactcaatgggttggagattcccgcaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcgctgagcagttataaatgaaatacatttaactcaatgggttggagattcccgcaatg 444

                      
Query: 245 caatttcagtt 255
           |||||||||||
Sbjct: 445 caatttcagtt 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)