BAC Information

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BAC

Clone NameMSMg01-410G17
Chromosome3 (Build37)
Map Location 44,405,151 - 44,597,818
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410G17.T7 (MSMg01no410_g17.b1)MSMg01-410G17.TJ (MSMg01no410_g17.g1)
ACCAG507672AG507673
length746759
length of high quality
(start - end)		325 (329 - 653)528 (76 - 603)
definitionCHROMAT_FILE: MSMg01no410_g17.b1 PHD_FILE: MSMg01no410_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:09 2005CHROMAT_FILE: MSMg01no410_g17.g1 PHD_FILE: MSMg01no410_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,597,494 - 44,597,818)(44,405,151 - 44,405,678)
sequence
NGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAAAGATTTACATGTCTCTACTCTTAATTTGGGATAGCCGAC
AGGAATCTGTTCGTCAGCCTATTTGTCTACCAGAAGTTGCAGTACATCTG
TCCTGCTTTTCTTCCTGAGCCAGTACTGCCCTTTGTACCTACAACCTCTA
TGTTCCACAACTTCATTTTTGAAGTATGATTTCTGAGACCCTGTACAAAT
TTCACTCTATAACAGCATTACTGTGACACCTCTGCCTTATGAGTTATCTC
CTTTACACAGACACTCTCCACATTTTTACCAGTTATCTCCTCTGCTTCTC
AGCCCACTGTCAAGTTCCTTGAACTCTCCTGAATCCTCTTTTTGTAACCC
TTCTGTACTCTATTCATACATACATATATTGATGCTTTTATTTTTGAAGT
ATATAAAGTGTGATCTGAAACTTAATATTAGTAATTAAGATTATAATTTA
TTTTAATAAAATATGTTTGCCTAATTCATGTCTATCATAAAAATAATGAT
CCATTGGCAAATTGTTCACATAGAAACCACCATGCCTTGTGTGTTAGTTA
TTATACAGTAAAATTTGACATTGTACAAATACGAAAACACATTTTTCTAT
GTCCTTGATGTAGAGGGCTCATGAGTCAGAAAACATAATGTCACTACTTG
ATAATTAAAACATCTGTTTGTATTCATGGATGACTTTGAATACTGC

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTGCACTATAATAAAAGGGAAAA
GAGATATAAAAGCTGGGATTCATGGCTATGTTATAAGAAACATGGGCCAT
ATTAATGTGTTTTTACATTTCAAGAATTTACTGAAAAATAGTAAATCCTT
AAGCAATGTTGATTTAGTTAGCTACAATTTTCCAATGAGTCGCATTCTCC
ATGACCATTGTTAATTATAAAACACAGATTATTAAGATTTTAATTTCCTA
GTCTGAGATCAAACATTACATATTATGTGATGATATCAATGGAGATCTAT
ATCCATCATCAATCAATGATGGATCTACCTAATACCTTTATATTACAAAA
TGGCAATAGATCAAACAAAGTAGAGTAGCAGAGAGTCTCATCTAGAGACA
GAGATGGGACTGCCAACAGACACAAAGAAAATTGTTATATGTAACTACAT
AAGTATTAACAACTAAATTGAAGAGAGCTGTTGAGAGTCATAGATCCAGG
CTGCAAGGTAACCAGTAAAGACAGACCTTGACTTTAGTCACCTCTAACTT
CTTAAGGCTATAGAGGTACAGAGATGTAAAGTTCAGGCATAAGATTTCAA
GACTGGAGAGGCTAAAGAGACGGACCGGTACACTGGAGTAATTGTTAGAC
TAACAGAAATTCCGAGAAGACCTGGCTTGTGCTGGCATTGGGGCATAGTC
TTAACTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_g17.b1 MSMg01no410_g17.b1 CHROMAT_FILE:
MSMg01no410_g17.b1 PHD_FILE: MSMg01no410_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:09 2005
         (325 letters)



>mm_chr3_44597108_44597832
          Length = 725

 Score =  629 bits (325), Expect = 0.0
 Identities = 325/325 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagttatctcctctgcttctcagcccactgtcaagttccttgaactctcctgaatcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ccagttatctcctctgcttctcagcccactgtcaagttccttgaactctcctgaatcctc 652

                                                                       
Query: 61  tttttgtaacccttctgtactctattcatacatacatatattgatgcttttatttttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tttttgtaacccttctgtactctattcatacatacatatattgatgcttttatttttgaa 592

                                                                       
Query: 121 gtatataaagtgtgatctgaaacttaatattagtaattaagattataatttattttaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gtatataaagtgtgatctgaaacttaatattagtaattaagattataatttattttaata 532

                                                                       
Query: 181 aaatatgtttgcctaattcatgtctatcataaaaataatgatccattggcaaattgttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaatatgtttgcctaattcatgtctatcataaaaataatgatccattggcaaattgttca 472

                                                                       
Query: 241 catagaaaccaccatgccttgtgtgttagttattatacagtaaaatttgacattgtacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 catagaaaccaccatgccttgtgtgttagttattatacagtaaaatttgacattgtacaa 412

                                    
Query: 301 atacgaaaacacatttttctatgtc 325
           |||||||||||||||||||||||||
Sbjct: 411 atacgaaaacacatttttctatgtc 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no410_g17.g1 MSMg01no410_g17.g1 CHROMAT_FILE:
MSMg01no410_g17.g1 PHD_FILE: MSMg01no410_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:09 2005
         (528 letters)



>mm_chr3_44404951_44405878
          Length = 928

 Score = 1006 bits (520), Expect = 0.0
 Identities = 526/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgcactataataaaagggaaaagagatataaaagctgggattcatggctatgttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgcactataataaaagggaaaagagatataaaagctgggattcatggctatgttata 260

                                                                       
Query: 61  agaaacatgggccatattaatgtgtttttacatttcaagaatttactgaaaaatagtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaacatgggccatattaatgtgtttttacatttcaagaatttactgaaaaatagtaaa 320

                                                                       
Query: 121 tccttaagcaatgttgatttagttagctacaattttccaatgagtcgcattctccatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttaagcaatgttgatttagttagctacaattttccaatgagtcgcattctccatgac 380

                                                                       
Query: 181 cattgttaattataaaacacagattattaagattttaatttcctagtctgagatcaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgttaattataaaacacagattattaagattttaatttcctagtctgagatcaaaca 440

                                                                       
Query: 241 ttacatattatgtgatgatatcaatggagatctatatccatcatcaatcaatgatggatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacatattatgtgatgatatcaatggagatctatatccatcatcaatcaatgatggatc 500

                                                                       
Query: 301 tacctaatacctttatattacaaaatggcaatagatcaaacaaagtagagtagcagagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tacctaatacctttatattacaaaatggcaatagatcaaacaaagtagaatagcagagag 560

                                                                       
Query: 361 tctcatctagagacagagatgggactgccaacagacacaaagaaaattgttatatgtaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcatctagagacagagatgggactgccaacagacacaaagaaaattgttatatgtaac 620

                                                                       
Query: 421 tacataagtattaacaactaaattgaagagagctgttgagagtcatagatccaggctgca 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 tacataagtattaacaactaaattgaagagagctgctgagagtcatagatccaggctgca 680

                                                           
Query: 481 aggtaaccagtaaagacagaccttgactttagtcacctctaacttctt 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtaaccagtaaagacagaccttgactttagtcacctctaacttctt 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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