BAC Information

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BAC

Clone NameMSMg01-410J01
Chromosome3 (Build37)
Map Location 59,928,748 - 59,929,320
singlet/doubletsinglet
Overlap genenone
Upstream geneP2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410J01.T7 (MSMg01no410_j01.b1)MSMg01-410J01.TJ (MSMg01no410_j01.g1)
ACCAG507784AG507785
length709814
length of high quality
(start - end)
571 (84 - 654)---
definitionCHROMAT_FILE: MSMg01no410_j01.b1 PHD_FILE: MSMg01no410_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:20 2005CHROMAT_FILE: MSMg01no410_j01.g1 PHD_FILE: MSMg01no410_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATGTNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTTTAGATCTTCGGAATTATGTGTGCATAT
CTTCTCTAGGCAATGGTTAGAACTCACTCATTGATGGTTCAAATGTGCAA
AACTTAAAGTCGAGTTCTGTGTTTTCTGAGCTTCTACCACAAGAAAAAAC
GCGTATTGTTTCTACTCTTCTTTTATTAGGCCTGCATGTTTATTTAAAAG
TGGATATGACACTGTTCTGATAGATGTTGGTGAGGGAAAGAGGCACATTT
TCTCATTTTCCTTCTCTATACTTTACCTGTGGGAAGCTGTTGGGAAGGTG
CTACTTAGCCGGGGAGTGGACAGTGAGTTTGACATGCACTTTTCAGACTT
TCTCTATCTTTCTAGAACAGTGGCCTCCTCACCTGGTACTCTTCATGAGA
GAGAATATATGAAAATGGTAAACCTATTAGTAAATTATGAACATGTCTGC
CTGATGCTCACAGGTTTATACTAAAGCCTGTGACGAATTGACATGAAGGG
GGTACTGAGCCTACACATGCTACAGATGAGAAACAAGAAAGGGGGAAGAT
TGGGATTCCCTTTACCCTCACGTGCTGCTGTTTATGACGAGGACATTCTG
AATGGGCTGAAATGTGGAGTAAAGACTTGCAGCTGAGGAGCTGAGCTGGC
TCTGGGCAC
GTCCTTGCTCTATGCATATCCCCATCCCACCCTGACCCTCCCCCTCCCTT
TCCTCTTCTTCCCTCTTCCTCTCCCTCAACCCACTCTCCTTCTTTATTTT
TTCTTCTTCATTCTTCCCCTTTCATGATATTTTCTTTGCCTTACCCGTAA
CTCCCGTTCGTTCCCACTCCCTTTCTACTCCGCGCCTTCCGCACTATTCG
CCTTCGCGCAACCCAATNACTNTTCGCTCNTTTCCATCACCCTAATCAAG
CATATCTCCCTCTCTCTATTTTATCTATCTATTCTCTCTCATTACCATCT
TCATATCTCTCCTCTTTTCCTCCTTCTCTCCTTCTCTCCTACTCCTCTAT
TTATANCTGTTTACGACCTACCCCCCCGCCCCCCCCCTCCTNTCTTNNCT
CNNAAANAAAAAAAAANAAAANAATTCTTTTTTTTTCTTTCNCTTTTNTT
CNNTCTGCTACTTCCCACCCCACCCTTCCCTTATTTTATTTTATNCAAAA
NAAACCAAANNCACCTTCTTTCTCTCCTTTCGTTGGCTTCGNTATCCACA
TTCCCATTCCTCACCTTACTCTCTCCCACTTTTCCTCCATTTCTTCTNCT
CTCCTTTTTCCTTATCAAAACACAACTATAAACCCATTTCNTATTGNTTT
TNTTTCTNTCTTTTCTCTTCTTACCTTTTTCTATTNCTTTCCCTCCCTTC
CCCCACCANCCCCAANAACTTATANTATTTGTTATTTTTGGNTTTGTGNN
TCCACCACCATCCTCCCCCTATTTCCCTCTTCCTATCCCCTTTCTCCCTT
CCCCCCTCCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_j01.b1 MSMg01no410_j01.b1 CHROMAT_FILE:
MSMg01no410_j01.b1 PHD_FILE: MSMg01no410_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:20 2005
         (571 letters)



>mm_chr3_59928548_59929520
          Length = 973

 Score = 1042 bits (539), Expect = 0.0
 Identities = 564/573 (98%), Gaps = 2/573 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattatgtgtgcatatcttctctaggcaatggttagaactcactcattgatggttcaaa 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattgtgtgtgcatatcttctctaggcaatggttagaactcactcattgatggttcaaa 260

                                                                       
Query: 61  tgtgcaaaacttaaagtcgagttctgtgttttctgagcttctaccacaagaaaaaacgcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgcaaaacttaaagtcgagttctgtgttttctgagcttctaccacaagaaaaaacgcg 320

                                                                       
Query: 121 tattgtttctactcttcttttattaggcctgcatgtttatttaaaagtggatatgacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tattgtttctactcttcttttattaggcctgcatgtttatttaaaagtggaaatgacact 380

                                                                       
Query: 181 gttctgatagatgttggtgagggaaagag--gcacattttctcattttccttctctatac 238
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 381 gttctgatagatgttggtgagggaaagagaggcacattttctcattttccttctctatac 440

                                                                       
Query: 239 tttacctgtgggaagctgttgggaaggtgctacttagccggggagtggacagtgagtttg 298
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tttacctgtgggaagctgttgggaaggtgctacttagtcggggagtggacagtgagtttg 500

                                                                       
Query: 299 acatgcacttttcagactttctctatctttctagaacagtggcctcctcacctggtactc 358
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgcactcttcagactttctctatctttctagaacagtggcctcctcacctggtactc 560

                                                                       
Query: 359 ttcatgagagagaatatatgaaaatggtaaacctattagtaaattatgaacatgtctgcc 418
           ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcatgagagagaatatttgaaaatagtaaacctattagtaaattatgaacatgtctgcc 620

                                                                       
Query: 419 tgatgctcacaggtttatactaaagcctgtgacgaattgacatgaagggggtactgagcc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgatgctcacaggtttatactaaagcctgtgacgaattgacatgaagggggtactgagcc 680

                                                                       
Query: 479 tacacatgctacagatgagaaacaagaaagggggaagattgggattccctttaccctcac 538
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacacatgctacagacgagaaacaagaaagggggaagattgggattccctttaccctcac 740

                                            
Query: 539 gtgctgctgtttatgacgaggacattctgaatg 571
           |||||||||||||||||||||||||||||||||
Sbjct: 741 gtgctgctgtttatgacgaggacattctgaatg 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 973
Length adjustment: 10
Effective length of query: 561
Effective length of database: 963
Effective search space:   540243
Effective search space used:   540243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)