BAC Information

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BAC

Clone NameMSMg01-410K12
Chromosome3 (Build37)
Map Location 10,424,349 - 10,424,922
singlet/doubletsinglet
Overlap geneSnx16
Upstream geneZfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c
Downstream geneLOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410K12.T7 (MSMg01no410_k12.b1)MSMg01-410K12.TJ (MSMg01no410_k12.g1)
ACCAG507854AG507855
length743746
length of high quality
(start - end)
184 (335 - 518)576 (80 - 655)
definitionCHROMAT_FILE: MSMg01no410_k12.b1 PHD_FILE: MSMg01no410_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:27 2005CHROMAT_FILE: MSMg01no410_k12.g1 PHD_FILE: MSMg01no410_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTAAGATTGCTGCCTATTCAGTGACATTCAGAATTGCCTC
TGGTATTACACTATCACTTTGAATAAAAGCTAAGTCACTGCCCTACACAG
GAATTTACCATCTTCTAGGAAGAAGAAAGTTTGAGACCTAAAGAGGAACC
AGAATAGATACTTAGAACTATAGATAGCTGAGTTACACCCATACACACAT
ATTTACTATGGCCTAAGAGAAAGGTGGACTATACAATAGACTAAAATAGG
GACTATGGCAAGGGCACGAAGCTCTTTTTATCTCTGGATTCTAAGATTAA
GTGAATCTTAGGTGGAGCTCTTGTTGATCCCAGTTGTTAACAATGAATTC
TATCCCAGGTGGTTCCTGTTAGACCTTCTGTGTTTGCATTCCTCTGTTTT
ATGTAAGAATCCAGTAACCTCTTTGTACCTTGCTGGCGTGTCACCCAACT
TCTTTATTTTCTTCTGTATAAAAAGTTTGGTGCTTGATTTGACAAATTAC
ATTCAGATTCTACACAACCTCTACTGTGTGCATCTGTCTGTCATCTCATC
TGACGCTTTGTCCACCTGCCACAGAGACCCGTTCTACACAGACTAAGGGG
CCCTAGAGTTTCTGATGCATGAGGGGACCTCGCGAAAGTGGAAGTGGAGG
CGTCTTCTGACTCTTACGCCTGTCTTCTATATCTCCTTCCTTT
NNAACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGACAAACCTATAGAAAC
AACCTAATCATGCAAACAAAGAGAATATATACTAAGTAAAACTAACTGGG
AGAAAAAGCAATGCATCAGAGTTATGCAACAAAGTGAAAATTACAAGGAG
TCCTGGGGGAAGGGCGGAGGGGACAGCAAGGGACTTGAGATGATGGCCAT
GACTCCTTCACACCTCAGGAGCATGCATGTGATGAACACAGGGGCCACAT
GCTGATGTATCCCAATCAGATTATTAATAGTCCAAGACAGAGATCTTCCA
AACAGAGCAGAAGCACCCACCATACACAGAAATGACAATAAAATGAAAGG
CCGACTTTTCCTCTAGATTGATAGTGAAGGCAAGAAATGACCCATTCAAG
GGGCTGGACAAAAAACAATCTGGGGGAAAAAGGAAGTTTTATAATTGTCA
CATGTTTGTGAGGACATGGAGAAACAGAAACTCTCCTAAACTATCAATGG
GAAACCACTCAGGTAAAACAGTCCAATAGTTTAGAAAAAATTACGAACTT
CTTTAAAAAGGTAAACATTGGGAAATACTACAAAAAAGTAATTGCTTTCC
CAGGACCTAGCGCAAGAGAGAGGAAAGCCTGCATGTATCAGTGTTTAAAA
GAAATTGTCCATAGTGACTCATAATGGAATAATACTTGCACATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_k12.g1 MSMg01no410_k12.g1 CHROMAT_FILE:
MSMg01no410_k12.g1 PHD_FILE: MSMg01no410_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:27 2005
         (576 letters)



>mm_chr3_10424149_10425123
          Length = 975

 Score = 1060 bits (548), Expect = 0.0
 Identities = 569/576 (98%), Gaps = 2/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagacaaacctatagaaacaacctaatcatgcaaacaaagagaatatatactaagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagacaaacctatagaaacaacctaatcatgcaaacaaagagaatatatactaagtaa 260

                                                                       
Query: 61  aactaactgggagaaaaagcaatgcatcagagttatgcaacaaagtgaaaattacaagga 120
           |||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactaact-ggagaaaaagcaacacatcagagttatgcaacaaagtgaaaattacaagga 319

                                                                       
Query: 121 gtcctgggggaagggcggaggggacagcaagggacttgagatgatggccatgactccttc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 320 gtcctgggggaagggcggaggggacagcaaaggacttgagatgatggccatgactccttc 379

                                                                       
Query: 181 acacctcaggagcatgcatgtgatgaacacaggggccacatgctgatgtatcccaatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acacctcaggagcatgcatgtgatgaacacaggggccacatgctgatgtatcccaatcag 439

                                                                       
Query: 241 attattaatagtccaagacagagatcttccaaacagagcagaagcacccaccatacacag 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attattaaaagtccaagacagagatcttccaaacagagcagaagcacccaccatacacag 499

                                                                       
Query: 301 aaatgacaataaaatgaaaggccgacttttcctctagattgatagtgaaggcaagaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaatgacaataaaatgaaaggccgacttttcctctagattgatagtgaaggcaagaaatg 559

                                                                       
Query: 361 acccattcaaggggctggacaaaaaacaatctgggggaaaaaggaagttttataattgtc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 acccattcaaggggctggacaaaaaacaatctgggggaaaaaggaagttttataat-gtc 618

                                                                       
Query: 421 acatgtttgtgaggacatggagaaacagaaactctcctaaactatcaatgggaaaccact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acatgtttgtgaggacatggagaaacagaaactctcctaaactatcaatgggaaaccact 678

                                                                       
Query: 481 caggtaaaacagtccaatagtttagaaaaaattacgaacttctttaaaaaggtaaacatt 540
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 caggtaaaacagtccaatagtttagaaaaaattatgaacttctttaaaaaggtaaacatt 738

                                               
Query: 541 gggaaatactacaaaaaagtaattgctttcccagga 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 739 gggaaatactacaaaaaagtaattgctttcccagga 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space:   546190
Effective search space used:   546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)