Query= MSMg01no410_m17.b1 MSMg01no410_m17.b1 CHROMAT_FILE:
MSMg01no410_m17.b1 PHD_FILE: MSMg01no410_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:38 2005
(234 letters)
>mm_chr3_40000609_40001242
Length = 634
Score = 424 bits (219), Expect = e-123
Identities = 234/245 (95%), Gaps = 11/245 (4%)
Strand = Plus / Plus
Query: 1 ttctgtgatttgctcttaagtagatgactttctagtggaagaagaagaaatttttcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgtgatttgctcttaagtagatgactttctagtggaagaagaagaaatttttcaaaa 260
Query: 61 atacctacaaagaccatctcctatagcatgaaaactgtttcaatggtttccttggtcact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacctacaaagaccatctcctatagcatgaaaactgtttcaatggtttccttggtcact 320
Query: 121 gctcactctctccacacaagaatgtggtgtttttttt-tttgtttgtttgtttgttt--- 176
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gctcactctctccacacaagaatgtggtgttttttttgtttgtttgtttgtttgtttttg 380
Query: 177 -------gtttgttttttactgcaataaactctgcctgtcttctgtgctgcatcctatgt 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtttgtttgttttttactgcaataaactctgcctgtcttctgtgctgcatcctatgt 440
Query: 230 gccca 234
|||||
Sbjct: 441 gccca 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no410_m17.g1 MSMg01no410_m17.g1 CHROMAT_FILE:
MSMg01no410_m17.g1 PHD_FILE: MSMg01no410_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:38 2005
(469 letters)
>mm_chr3_40197359_40198226
Length = 868
Score = 890 bits (460), Expect = 0.0
Identities = 467/470 (99%), Gaps = 3/470 (0%)
Strand = Plus / Minus
Query: 1 cttgggaggaaactgtataatctgaacagggctgtaagagctgttgtctggaatttgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cttgggaggaaactgtataatctgaacagggctgtaagagctgttgtctggaatttgctc 609
Query: 61 tgtaataatttaaaagttattgcagtcatgttagcagcacagccgtcctttagtattttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgtaataatttaaaagttattgcagtcatgttagcagcacagccgtcctttagtattttc 549
Query: 121 ttgggggaaagcttgaaaaaaaaaatgcttatttgggtttaagttacatgactgtggaaa 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttgggggaaagcttg--aaaaaaaatgcttatttgggtttaagttacatgactgtggaaa 491
Query: 181 ggttatatattttccattttaagaccaattaaatag-ttccccccttcttttgtccacag 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 490 ggttatatattttccattttaagaccaattaaatagtttccccccttcttttgtccacag 431
Query: 240 taacaaaaataagaacttaatgttaacatttagaactttattgtaggttgaccttcatca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 taacaaaaataagaacttaatgttaacatttagaactttattgtaggttgaccttcatca 371
Query: 300 agggaagtttttattctggataactcataagagtaaatgctgttttgagagagtaaaagc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agggaagtttttattctggataactcataagagtaaatgctgttttgagagagtaaaagc 311
Query: 360 tgctgttatgttttaaacaaaatatgaaacataattttccacgagtagacatatggtata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgctgttatgttttaaacaaaatatgaaacataattttccacgagtagacatatggtata 251
Query: 420 tagtgactaggagtttcaaaagaatggggatacttgatacttatttgggt 469
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tagtgactaggagtttcaaaagaatggggatacttgatacttatttgggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 868
Length adjustment: 10
Effective length of query: 459
Effective length of database: 858
Effective search space: 393822
Effective search space used: 393822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
