Query= MSMg01no410_p07.b1 MSMg01no410_p07.b1 CHROMAT_FILE:
MSMg01no410_p07.b1 PHD_FILE: MSMg01no410_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:51 2005
(365 letters)
>mm_chr3_147920103_147920867
Length = 765
Score = 690 bits (357), Expect = 0.0
Identities = 363/365 (99%)
Strand = Plus / Minus
Query: 1 gtgaacaaaagtataattcagtttagaaaataaatctccaaacagttacattgtctggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgaacaaaagtataattcagtttagaaaataaatctccaaacagttacattgtctggat 506
Query: 61 aaacgtttatgatgggtttttgtgtataggtttttaaaagttgcagtattcagtattatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaacgtttatgatgggtttttgtgtataggtttttaaaagttgcagtattcagtattatt 446
Query: 121 ttaagattgttgatctctcttgagtaaacgctagataaattaaacatacctatgaagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 ttaagattgttgatctctcttgagtaaacgctagataaattaaacatacctatgatgtta 386
Query: 181 ctcaaaatataattacaaaatacactgttggaaattttgaaaatttttgtatgtatgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaaaatataattacaaaatacactgttggaaattttgaaaatttttgtatgtatgtat 326
Query: 241 actgtaggtgctatgatttcatagatttgtagctatcatgatggcaatagtgtggatggt 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgtaggtgctatgagttcatagatttgtagctatcatgatggcaatagtgtggatggt 266
Query: 301 tattttaaatgtttcacatattaattgtttataaatgtcactattaagatctttaaaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattttaaatgtttcacatattaattgtttataaatgtcactattaagatctttaaaagt 206
Query: 361 ataca 365
|||||
Sbjct: 205 ataca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space: 269136
Effective search space used: 269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_p07.g1 MSMg01no410_p07.g1 CHROMAT_FILE:
MSMg01no410_p07.g1 PHD_FILE: MSMg01no410_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:51 2005
(453 letters)
>mm_chr3_147747210_147748048
Length = 839
Score = 619 bits (320), Expect = 0.0
Identities = 415/456 (91%), Gaps = 24/456 (5%)
Strand = Plus / Plus
Query: 1 tttcaaaatttttgtctgaagacctttatgctttaaattttg-aaaaaaaatattttgga 59
||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 201 tttcaaattttttgtctgaagacctttatgctttaagttttgaaaaaaaaatattttgga 260
Query: 60 gagttttaagacgg-agtttggtgagttttttgtttgtttgttttcttttcttttgtttc 118
|||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 261 gagttttaagacggaagtttggtgagttttttgtttttttgt----ttttctttagtttc 316
Query: 119 aattcagttactagaggatatttttcatcatctccacacttgaattagttca-acaacac 177
||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||||||
Sbjct: 317 aattcagttactagaggatgtttttcatcaaatccacacttgaattaattcagacaacac 376
Query: 178 actttttgtaattcttatttctctataactaaaactttttgtatgtctatttttagaatt 237
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 377 actttctgtaattcttatttctctaaaactaaaactttttgtatgtctatttttagaatt 436
Query: 238 aatatttctcatgctatagcataacataatttttgacaagttataacattatacatttag 297
||||||||| |||||||| ||| |||||||||||| ||||| |||||||||||
Sbjct: 437 aatatttcttatgctata--ata---taatttttgacatgttat-----tatacatttag 486
Query: 298 ttttaatatgctttaatataaatcccctgtccttatgctttatggtttggggacttcttt 357
||||||||||||||||||||||||||||||| || ||||||| |||||||| |||| |||
Sbjct: 487 ttttaatatgctttaatataaatcccctgtcattgtgctttacggtttgggaactt-ttt 545
Query: 358 tgagctgtgagcttgatatttttgctaatctggaaaaataatctgaattccattgttgct 417
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 546 tgagctgtgagcttgatatttttgctaatctagaaaaataatctgaattccattgttgct 605
Query: 418 catataattggtttttttttctttacgtagagagtc 453
||||||||| ||||||||| ||||||||||||
Sbjct: 606 catataatt--ttttttttt----acgtagagagtc 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 839
Length adjustment: 10
Effective length of query: 443
Effective length of database: 829
Effective search space: 367247
Effective search space used: 367247
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
