CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTGTTTCCTTCTCCTCAACCATTTATCATAGCTAACATATTGA
TACTGGCATCTCTGAGTGATGATGATACAATGAACATCCACCAAGCATCA
AGCTGACCAGGCATTGTGGTGGGGACTTCTTTATTATGTATCTTACTAAA
TTTGCTTGATTGAGTAAGTGTGAGCAGCTTAGACAAATGATTATTTAGAA
TGATGAGTACTGTTGTTTAATCTTGGGACTTCTATAAGATGAGATCGCTC
TCAAAATAATCACTAGCATTATTATTTTCTAATGATGGACAGCAAAATAT
CTTGTCTGGGTCTGTTCTTTTCAGAGGAATCAAGGCATGCTAGAACTTTG
GAGAGGTTAGCTGTTCCCCGACCCCCAAAATTTAAGTTAACATCATTAGC
ACCTTGGCATTCTGTCCTTATCAAATGAAAATTGATTGTAAGTTTCCTTT
TTGGCAAGTATGTGAAATTAATGTAAATAAAATATCTCCTTGGGGGGGTT
GGAGAAATGACTAAGTGGTTATTTTTTTTAATTATTTTTTTACTTTCATT
TTTTATCTACCTTATTCATCCATTCACCTTCTTCCTCCCCTNCCCTCCCT
TTTCTTTTTCTTTTTTCCCTCCCTATCCCCCCTTTTCTCTCCTCCCCTCT
CCCTTTTTCCCTCTTCCCCCTTTTCCATCCCCCTTTTCCTATCCCCTTTT
TTCCTTTCCCTTCACCCTTCG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAACATTTCTAAGACTTTTCTCATGA
ATGGGTGCTGGATTTTGTCAAATGCTTCCTCAGCATTTAACAAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTAGATTACATTGATGGA
TTTCTACATATTAAACCATCCCTGCATCTCTGGGATGAAGCCTACTTGAT
CATGATGGATGATCGTTTTGATGTGTTCTTAGATTCAGTTTGCAAGAATT
TTGTTGAGTATTTTTGCATCGATATTCAAAAGGGAAATTGGTCTGAAGTT
TTCTTTCTTTTTTGGGGCATTGGACGGTTTTGTTATCATCAAAAATATGG
CTTCAAGTAATGAGTTGGATATTGTTCCTTCTGTTTCTATTTTGTGGAAT
AGTTTGAAGAGTATTGTTATTAGGTCTTCTTTGAAGGTCTGATAGAACTC
TGCAGTAAATCCATCTGGTCCTGAGCTTTTTTTTTTTTTTTCTTTTTCTT
GGGATACTCTTATGGGATGCTTCTTTTTCCTTAAGGGACATGGCAACGGC
CCCTTTTATTGTCTCCTCTTCGCCACTTTCATACTTTTATCTTTTTTTTT
TCTTTCTCTTCCTCTTCCTTTCTCTCTCTTCTTCCCTCTCCCTTCCCTAT
CCCTTTTCCCTTTCTCTTTCCCTTCCCTTCTCCCTCCTTTTCCCTTCCTC
CCCTCTTTTCTTTTCCGC

Query= MSMg01no411_b17.b1 MSMg01no411_b17.b1 CHROMAT_FILE:
MSMg01no411_b17.b1 PHD_FILE: MSMg01no411_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:02 2005
         (536 letters)



>mm_chr3_21193996_21194928
          Length = 933

 Score =  969 bits (501), Expect = 0.0
 Identities = 522/531 (98%), Gaps = 5/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgtttccttctcctcaaccatttatcatagctaacatattgatactggcatc 64
           |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattctgtgcttgattctcctcaaccatttatcatagctaacatattgatactggcatc 672

                                                                       
Query: 65  tctgagtgatgatgatacaatgaacatccaccaagcatcaagctgaccaggcattgtggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tctgagtgatgatgatacaatgaacatccaccaagcatcaagctgaccaggcattgtggt 612

                                                                       
Query: 125 ggggacttctttattatgtatcttactaaatttgcttgattgagtaagtgtgagcagctt 184
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 611 ggggacttctttattatgtatcttactaaatttgcttgattg----agtgtgagcagctt 556

                                                                       
Query: 185 agacaaatgattatttagaatgatgagtactgttgtttaatcttgggacttctataagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agacaaatgattatttagaatgatgagtactgttgtttaatcttgggacttctataagat 496

                                                                       
Query: 245 gagatcgctctcaaaataatcactagcattattattttctaatgatggacagcaaaatat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gagatcgctctcaaaataatcactagcattattattttctaatgatggacagcaaaatat 436

                                                                       
Query: 305 cttgtctgggtctgttcttttcagaggaatcaaggcatgctagaactttggagaggttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cttgtctgggtctgttcttttcagaggaatcaaggcatgctagaactttggagaggttag 376

                                                                       
Query: 365 ctgttccccgacccccaaaatttaagttaacatcattagcaccttggcattctgtcctta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgttccccgacccccaaaatttaagttaacatcattagcaccttggcattctgtcctta 316

                                                                       
Query: 425 tcaaatgaaaattgattgtaagtttcctttttggcaagtatgtgaaattaatgtaaataa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcaaatgaaaattgattgtaagtttcctttttggcaagtatgtgaaattaatgtaaataa 256

                                                              
Query: 485 aatatctccttgggggggttggagaaatgactaagtggttattttt-ttta 534
           ||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 255 aatatcttcttgggggggttggagaaatgactaagtggttatttttattta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 933
Length adjustment: 10
Effective length of query: 526
Effective length of database: 923
Effective search space:   485498
Effective search space used:   485498
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)