AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATAGGGAAAACTCCAACACAAGGAGGGTACCTATACCAAAGAAAAG
ACAAGATACAAATCATCTCACAACAAAGCCAAAAAGAAGATATTCACATA
CACACAATGACACCTACAACAACAAACATAATAGGAAATAACAATCATTT
GTCTTTAATATCTCTCAATATTAACAGATTCAATTCCACAATAAAAGGAC
ACAAGCTTACAGACTGAATATGTAAATGGGACCCATCATTTTGCTGAATA
AGGGAAACACAACTCAACAAAAGATATTGACAAAAGCTCGGAGTAAAAGG
CTGGAAAAAAATTCTTCCAAGCAAATGGTCCCAAGAAACAAGCTGAAGTT
GCCATCCTAATATCCAATAAAATAAACTTTTAACCAAAAGTTATCAAATG
AAATGAGGAAGGACATTTCATATTCATCACTGGAAAAAATTCAAGAGAAA
ACCTCAATTCTGAACATCTATGCTGCAAATACAAGGGTGGCCACAGTTGT
AAAATAAAGTTTACTAAACCTCAAAACACACATTGAACTTTACACAATAA
TAGTGGGAGATTTCAACACTCCACTTCCATTAATGGATAGGCCATTGGAA
CAGAAACCAAACAGAAACAAAGTGAAACTAATAGAGGCTATGAACCAAAT
GGATTTTACTGGCNTATACCGAACCTTAAAAAAACTACTACCCCTTTTCT
CACACCCCCTGGGACTACTCCAATTTGACCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCATGTGAAATGGCCCTGCTGTATTTAGAAGACATTGTTTTCTT
GGTGTCTTCCTTCTCCTCTGGCTCTTATATTATTTCTTCTACATGGTTCC
TTGAGTCCTAAGAGGAGGAATTTGATAGAGACACAAATTTTAGGACTGAG
TGATTTAAGGTCTCTCATTCTCTGTGTATGGATGTGGAGTCTTTTTGTAT
TTGTTCACTTCTGCTGCAGAATGAAACTTCTCTGTTGTTGCATGAGCAAG
ACACTGGTCTAGGAGTATAGTAGAATGTCATAAGCAGTTACTTTGTTGAT
ATTTTCATTTACTCGAAGCATAATATTTTTCACATATATTTTAATTCTTT
GGAAAAAGATACTATGCTGCATAAAGTTTAATTTTCTATACTGAAAAGAA
GTAAAAAATAAAATAACCAAGATTTTAAAGACAGAAAACACTGGCAGTCA
ATGGTTTCCTAAATTATCTTCCTCTTTGTCCAACCTAGTTGATCAGTTCC
TGGGTCACAAAATGCATCTGAGACTAGATCCAAAGAGTTAGTGAGGTTAA
GATACTGTAATGAGGCGCATACATTTGTGGGAAAGATAGATCATTATATC
CAGCCAACTGTCAATGTTAGAAATTATCCTAACCATTCCAGAGGCCCTTT
GCCCCTGGTAAAGAAATAAATTGCTGGGCGTGAGCCAATCGTATCTTTTT
TCCCCACACCN

Query= MSMg01no411_b21.g1 MSMg01no411_b21.g1 CHROMAT_FILE:
MSMg01no411_b21.g1 PHD_FILE: MSMg01no411_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:03 2005
         (510 letters)



>mm_chr3_4163178_4164087
          Length = 910

 Score =  944 bits (488), Expect = 0.0
 Identities = 504/510 (98%), Gaps = 2/510 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgtgaaatggccctgctgtatttagaagacattgttttcttggtgtcttccttctcc 60
           |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 203 tcatgtgaaatggccctgatgtatttagaagacattgttttcttggtgccttccttctcc 262

                                                                       
Query: 61  tctggctcttatattatttcttctacatggttccttgagtcctaagaggaggaatttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctggctcttatattatttcttctacatggttccttgagtcctaagaggaggaatttgat 322

                                                                       
Query: 121 agagacacaaattttaggactgagtgatttaaggtctctcattctctgtgtatggatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agagacacaaattttaggactgagtgatttaaggtctctcattctctgtgtatggatgtg 382

                                                                       
Query: 181 gagtctttttgtatttgttcacttctgctgcagaatgaaacttctctgttgttgcatgag 240
           ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 gagtcttt--gtatttgttcacttctgctgcagaatgaaacttctctgttgttgcacgag 440

                                                                       
Query: 241 caagacactggtctaggagtatagtagaatgtcataagcagttactttgttgatattttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagacactggtctaggagtatagtagaatgtcataagcagttactttgttgatattttc 500

                                                                       
Query: 301 atttactcgaagcataatatttttcacatatattttaattctttggaaaaagatactatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttactcgaagcataatatttttcacatatattttaattctttggaaaaagatactatg 560

                                                                       
Query: 361 ctgcataaagtttaattttctatactgaaaagaagtaaaaaataaaataaccaagatttt 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 ctgcataaagtttaattttctatactgaaaagaagtgaaaaataaaataaccaagatttt 620

                                                                       
Query: 421 aaagacagaaaacactggcagtcaatggtttcctaaattatcttcctctttgtccaacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagacagaaaacactggcagtcaatggtttcctaaattatcttcctctttgtccaacct 680

                                         
Query: 481 agttgatcagttcctgggtcacaaaatgca 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 agttgatcagttcctgggtcacaaaatgca 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)