NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACGTTCGCGCGCGCGCGCACACACACACACACACACACAC
ACACACACACACACACACAAATATCATTGTATCCTATGCTTGGTAGAAAC
ATTACATGACAAGAAGACTAATCGGGTATTTAATATCTAGATGCTTTTAG
AAGGATAGAATTTATTACATGCATTTGCTATGAGTAGGTGATTCCTAAAT
GTTTATTTTAGTGTTCAAATCAAAAAAAATAATGAAATAACATATTCAAG
GTTAATTACAATAGACAAACTTTTTGAGAGCAACATCTTTACTAAACATT
AGAAAGATAATTATAAAATGAAAAAAAAAGTAAAGAACAGGCTGTATGAA
TTTTGGCATCAAAATTGATAAATACTTTTAAAACTAGCTATTCATAAAGA
GAATTTCTTTTCTCGCAAACAGCTCAGGAATATAGACATACAATAGCCTC
CTATAAAATACAGCTCAGAATGTAAGAAAATGTTTCTAATTCATTTCTTT
TAGGTTTTGCTGAGAAGGGTGAGGATTTTCATTTGACATATTGTTAAACA
ATTTTCTACTGACCACAGAGAATGTTTACNATTATTATTTTTTTGTACAG
TTTTCCTCTCAGNATTATTCTTAAATGAATTACAAAATGTGTGACTTGAA
TTTGAGGGACAAAAGTCGAACGTATTAATGGTTGCCTTGCCTTTTTAAAG
AAAGAAAATTTCTTC

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCGCGGATTCAGGACAGAAATGATGTGGGTCGGTTGGGG
AGCCGGGTATGGGGGAGGGGTAGTGCCTTCCCCCTCCCCCCNCCNCCCCC
CCCCCCCCCCCCGCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCTTTCCC
TCCCCCTCTTTTCCTCCTCTCCCTTTTTTTGCCCCCTTTCCCCCCTCCCT
CTCCCCTTTTTTTTCCCCTCTTCCCCCTCCTTTTTTTTTTTCCGTCCCCT
TTCCCCTCTTTTTCCTCTTTTCCCTCCCCCTTCTCTCTTTCTTTCTTCTT
CCCCCCCCTTTCCTTTTTTCCCCCCCTTCCCCTCCCCCCCTCTTTCCCTC
CCCCTCTTTTCCCCCCCTCCTTTCTCCCCCCCTTTTCCCCCCTCTTTTTC
CCCCCCTTCTCTTTCCTTCCTTCCCTTTTCCCCCCCCCTCTTTTTTCCTC
TTCTCTCCCCTTCTTCTCTCCTTTTCCTCCCTTTCCCCCTCTCTTCCTCT
TCCCCCCCCCCCTTTTCTTTTTCCCCCTCCTCCCCCTTCTCCTCCCTTCC
CCTCCTCCTTCTCTTTTCCCTTTCTTTTCCTCTCCCTTTTTCTCCTTCCC
CCTCCCTTCCCCTTCCCCCTTTTCCTTTTTCTTCTTTCCCTTTCCCTTCC
CCCCCCTTTTTCCCTCCCTCCTCTTCTTTCCTCCTTCCCC

Query= MSMg01no411_h09.b1 MSMg01no411_h09.b1 CHROMAT_FILE:
MSMg01no411_h09.b1 PHD_FILE: MSMg01no411_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:31 2005
         (541 letters)



>mm_chr3_155659185_155660123
          Length = 939

 Score =  859 bits (444), Expect = 0.0
 Identities = 487/502 (97%), Gaps = 2/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 40  acacacacacacacacacacacacacacacaaatatcattgtatcctatgcttggtagaa 99
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acacacacacacacacacacacacacacacaaatatcattgtatcctatgcttggtagaa 299

                                                                       
Query: 100 acattacatgacaagaagactaatcgggtatttaatatctagatgcttttagaaggatag 159
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 300 acattacatgacaagaagactaattgggtatttaatatctagatgcttttagaaggatag 359

                                                                       
Query: 160 aatttattacatgcatttgctatgagtaggtgattcctaaatgtttattttagtgttcaa 219
           ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 360 aatgtattacatgcatttgctatgagtaggtgattcataaatgtttattttagtgtttaa 419

                                                                       
Query: 220 atcaaaaaaaataatgaaataacatattcaaggttaattacaatagacaaactttttgag 279
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atcaaggaaaataatgaaataacatattcaaggttaattacaatagacaaactttttgag 479

                                                                       
Query: 280 agcaacatctttactaaacattagaaagataattataaaatgaaaaaaaaagtaaagaac 339
            |||||||| ||| |||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 480 ggcaacatccttattaaacattagaaagataattataaaatgaaaaaaa--gtaaagaac 537

                                                                       
Query: 340 aggctgtatgaattttggcatcaaaattgataaatacttttaaaactagctattcataaa 399
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aggctgtatgagttttggcatcaaaattgataaatacttttaaaactagctattcataaa 597

                                                                       
Query: 400 gagaatttcttttctcgcaaacagctcaggaatatagacatacaatagcctcctataaaa 459
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 598 gagaatttcttttctcgcaaacagctcaggaatatagacgtataatagcctcctataaaa 657

                                                                       
Query: 460 tacagctcagaatgtaagaaaatgtttctaattcatttcttttaggttttgctgagaagg 519
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tacagctcagaatgtaagaaactgtttctaattcatttcttttaggttttgctgagaagg 717

                                 
Query: 520 gtgaggattttcatttgacata 541
           ||||||||||||||||||||||
Sbjct: 718 gtgaggattttcatttgacata 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 939
Length adjustment: 10
Effective length of query: 531
Effective length of database: 929
Effective search space:   493299
Effective search space used:   493299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)