BAC Information

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BAC

Clone NameMSMg01-411H11
Chromosome3 (Build37)
Map Location 150,732,744 - 150,732,890
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411H11.T7 (MSMg01no411_h11.b1)MSMg01-411H11.TJ (MSMg01no411_h11.g1)
ACCAG508470AG508471
length771776
length of high quality
(start - end)
441 (49 - 489)44 (123 - 166)
definitionCHROMAT_FILE: MSMg01no411_h11.b1 PHD_FILE: MSMg01no411_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:31 2005CHROMAT_FILE: MSMg01no411_h11.g1 PHD_FILE: MSMg01no411_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCTGTATCGAATGTTATTCTAGCCTCTTATTATAAAAGACT
GGATTACCTTTCTCTAATTAATAAATACCTTGTGTATTTTGACACATTTC
TTGTGTATCCTCAAATAACTTCCATTCTGAGTACTAACTCATGGATTTTT
TTTTAATATACTGTGTATTTTATTATTATTTTTTTAGTATTTTTTTAAAT
TTTATTTTATTTTTATTAGGTATTTTCCTCGTTTACATTTTCAATGCTAT
CCCAAAAGTCCGCGATACCTTTTCCCCCAATCCACTACCCACCCACTCCC
CCATTTTGGCCCTGGGGTTCCCCTGTACTGGGGCATATACAGTTTGCAAG
TCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTAGGCCATCTTTTGATA
CATATGCAGCTAGAGTCAAGAGCTCCGGGGTATTGGTTAGTTCATAATGT
TGCTCCACCTATAGGGCTGCAGTTCCCTTTAGCTCCTTGAGTAATTTCTC
CAGCTCCTCCATTGGGGTCCGTGTTGGCCCTTTCATATCTGACTGGGAAT
ACCCACCTCTGGGCATGGTTAGGCCCCTGCAAACTCTCCCTACGCGTACC
TTTTATTTTTTTTTTTTTCATCAATCCTTTCCACCCTATTATTTGTCCTT
CCCTCCTTTTTCCCCTTTCCCCTCATGCTCCCCCTTATCCTTTTACCTCT
ATCTCTTTCCCCTCTCTCTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCTAGGAATACAGAATGGCA
GAGAAGCACCTGAAAAAATGTGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGNCAGAAGCTGGGAAGAACCCNGACTAAGGAAAGTN
TGTGAAATNNATTTCTCTTTTCTGGGGGATGTAGNANNTAAATTTTANNN
NNTTTTAANNAAAAGGATTTTTAGAATTTCCTATGCAAAGGGATGGGCCG
GGTGCGCTCTTCCGGGTTGTTTTNCCCCTNCCCAAGGGACTTCCCCAAAA
GAAAATGGACCCCCCNGNAAGATCATACAAAATTTGGGACTAAAAGGGCC
TTTTAAAACAGAAAATTGGGGGGGTTTTTCCCCCCCCCCCCACCCAAAAA
AGGGGGGGGNNNNNNCGTGTCGCGGGGAAAAACACTTTACTTCTCTTTTT
TTCTCCTCTCTTTTCTCCCCTTTTTTTTTTTNTTNTTTCTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTTTTCCTTCCTTTCCCT
TTTTTTTCTCTTTCTCTCTTTTTTTTTTTTTTTNTTNTTNCNCCTTTNTT
TTTTTTTTTTTTTTTTTNTTTTTTTTNCTTTCCTTTTTTTTTTTTTTTCT
TCTNCTTTCCTTTTCCTTTTTCCTTTTTTTTNCTCTTCCTCTCCCTTTTT
TTCCTTCCTATTATAGTACACACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_h11.b1 MSMg01no411_h11.b1 CHROMAT_FILE:
MSMg01no411_h11.b1 PHD_FILE: MSMg01no411_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:31 2005
         (441 letters)



>mm_chr3_150732540_150733380
          Length = 841

 Score =  223 bits (115), Expect = 3e-62
 Identities = 139/147 (94%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctgtatcgaatgttattctagcctcttattataaaagactggattacctttc 64
           ||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gaattctccggaatagaatgttattctagcctcttattataaaagactggattacctttc 292

                                                                       
Query: 65  tctaattaataaataccttgtgtattttgacacatttcttgtgtatcctcaaataacttc 124
           |||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 291 tctaattaataaatgccctgtgtattttgtcacatgtcttgtgtatcctcaaataacttc 232

                                      
Query: 125 cattctgagtactaactcatggatttt 151
           |||||||||||||||||| ||||||||
Sbjct: 231 cattctgagtactaactcctggatttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)