BAC Information

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BAC

Clone NameMSMg01-411I07
Chromosome3 (Build37)
Map Location 49,689,230 - 49,817,599
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411I07.T7 (MSMg01no411_i07.b1)MSMg01-411I07.TJ (MSMg01no411_i07.g1)
ACCAG508509AG508510
length747757
length of high quality
(start - end)
414 (327 - 740)441 (73 - 513)
definitionCHROMAT_FILE: MSMg01no411_i07.b1 PHD_FILE: MSMg01no411_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:35 2005CHROMAT_FILE: MSMg01no411_i07.g1 PHD_FILE: MSMg01no411_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,817,186 - 49,817,599)(49,689,230 - 49,689,670)
sequence
NGGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCGATTACTTCCTGATTTTGCAGAAGACCTGAGGTCAAAAC
AACTATTAATATTAAAAGTGAAATTTCAATAAATACACACACACACACAC
ACACATACACACACACACATACACACATGAATCTCATTTATATGCACACA
CAAACATACACTTGAAATTTCTAGAAAAATATTTTGATTATTGCTTTTAA
TTCAGTCACTCACTAAATGGGTCTTGAATGAACCAGGTTATGTTTCAAGT
ATTCTCGATGTAGTTCTGGTATTTATTAGGCAAGTCTCCTGCCTTCTTAG
ATCATATTCTGACAAGGATCTTCATGATGACCTTATCTAACCCTCAGTAT
CTCCCAGTAGACCTTTGTGTAAGCCTTACAACCTTAATAATATTATTATT
AAGGATTAGATTTTTACACATGAAATATTTTGTGGTCATACGCAAACCTT
ATTCAAACCATAAATAGTAATAGCAAGATAAAAAACCATAAATAGTAATA
GCAAGATAGAAAGAACTATATCACAAAGGTACAAAACAAATCATCTGATA
CCATTTCTTTTGATTGAATTGAGGCTGCAGCTAGTTAATATTTTATTACT
TTATGCTACATAGATTGTCCATGTGTCTCCATGATCTAGTCTATGCAAAT
AAGCATGGAGAAAGGTTACCATGAAGCTGAACATTTTTGGNTCATGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTAA
TGGGGTTATTTGATTTTTTTGGAGTCCACCTTCTTGAGTTCTTTATATAA
TTTTTTAAAAAGGGAAAAAAAAACAAAGAAAACATAGCAGCTCTTGGTAG
AGTTGGGCTTGTTTCTAAGATGTCTATGTCATCTTATGTCTCAGCAGTCA
CAGGACAGCAGCAACAACTTTTATATGTGGGAACTGTGTGGTTTTTCTAT
CGTCCTAGAACATAAGGACAGAGTCTTGTTCAATAGTCTTGGCAGGTGCT
TTCTTTGGCTTTTAGGAATATGACTTCATTTGATGGATATATTTTTAGTT
CCCCCTGGGAAGTTGCAAAGTGGAATTACTTTCTTGCCTTCCTATTTGTT
ATTTTTATGGCAGGCCCTTAGCTACAGATACATGTTTGCCTGGGATAAAT
AGCCCTGCCAGAGCAGCATGACATTATGTCCTTAGCATTGAGAGTTTTTT
TCTTTTTTAGCACTGATCTTTGTATGCCCTGATTTGAATTCTTGGACACA
TAAAATCCACATTTACGAAAATATTCCCCCAACCATTTACATTTTGTTGG
CCAATCCTAGAATTCGTACCATTTTCCCCCAACATACTTTCCTGGTGTGC
GGTGAGTCAACTTTCTCGGACGCCCAGGTTGGCCAATTCTATATTCTGTC
CTATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_i07.b1 MSMg01no411_i07.b1 CHROMAT_FILE:
MSMg01no411_i07.b1 PHD_FILE: MSMg01no411_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:35 2005
         (414 letters)



>mm_chr3_49816986_49817799
          Length = 814

 Score =  801 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggcaagtctcctgccttcttagatcatattctgacaaggatcttcatgatgaccttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 taggcaagtctcctgccttcttagatcatattctgacaaggatcttcatgatgaccttat 555

                                                                       
Query: 61  ctaaccctcagtatctcccagtagacctttgtgtaagccttacaaccttaataatattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctaaccctcagtatctcccagtagacctttgtgtaagccttacaaccttaataatattat 495

                                                                       
Query: 121 tattaaggattagatttttacacatgaaatattttgtggtcatacgcaaaccttattcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tattaaggattagatttttacacatgaaatattttgtggtcatacgcaaaccttattcaa 435

                                                                       
Query: 181 accataaatagtaatagcaagataaaaaaccataaatagtaatagcaagatagaaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 accataaatagtaatagcaagataaaaaaccataaatagtaatagcaagatagaaagaac 375

                                                                       
Query: 241 tatatcacaaaggtacaaaacaaatcatctgataccatttcttttgattgaattgaggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tatatcacaaaggtacaaaacaaatcatctgataccatttcttttgattgaattgaggct 315

                                                                       
Query: 301 gcagctagttaatattttattactttatgctacatagattgtccatgtgtctccatgatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcagctagttaatattttattactttatgctacatagattgtccatgtgtctccatgatc 255

                                                                 
Query: 361 tagtctatgcaaataagcatggagaaaggttaccatgaagctgaacatttttgg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tagtctatgcaaataagcatggagaaaggttaccatgaagctgaacatttttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no411_i07.g1 MSMg01no411_i07.g1 CHROMAT_FILE:
MSMg01no411_i07.g1 PHD_FILE: MSMg01no411_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:36 2005
         (441 letters)



>mm_chr3_49689030_49689870
          Length = 841

 Score =  830 bits (429), Expect = 0.0
 Identities = 438/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgagccccatttttaatggggttatttgatttttttggagtccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagccccatttttaatggggttatttgatttttttggagtccacctt 260

                                                                       
Query: 61  cttgagttctttatataattttttaaaaagggaaaaaaaaacaaagaaaacatagcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatataattttttaaaaagggaaaaaaaaacaaagaaaacatagcagct 320

                                                                       
Query: 121 cttggtagagttgggcttgtttctaagatgtctatgtcatcttatgtctcagcagtcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttggtagagttgggcttgtttctaagatgtctatgtcatcttatgtctcagcagtcaca 380

                                                                       
Query: 181 ggacagcagcaacaacttttatatgtgggaactgtgtggtttttctatcgtcctagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacagcagcaacaacttttatatgtgggaactgtgtggtttttctatcgtcctagaaca 440

                                                                       
Query: 241 taaggacagagtcttgttcaatagtcttggcaggtgctttctttggcttttaggaatatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaggacagagtcttgttcaatagtcttggcaggtgctttctttggcttttaggaatatg 500

                                                                       
Query: 301 acttcatttgatggatatatttttagttccccctgggaagttgcaaagtggaattacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttcatttgatggatatatttttagttccccctgggaagttgcaaagtggaattacttt 560

                                                                       
Query: 361 cttgccttcctatttgttatttttatggcaggcccttagctacagatacatgtttgcctg 420
           |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 561 cttgtcttcctatttgttatttttatggcaggtccttagctatagatacatgtttgcctg 620

                                
Query: 421 ggataaatagccctgccagag 441
           |||||||||||||||||||||
Sbjct: 621 ggataaatagccctgccagag 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)