Query= MSMg01no411_i12.b1 MSMg01no411_i12.b1 CHROMAT_FILE:
MSMg01no411_i12.b1 PHD_FILE: MSMg01no411_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:37 2005
(557 letters)
>mm_chr3_146577477_146578430
Length = 954
Score = 978 bits (506), Expect = 0.0
Identities = 541/556 (97%), Gaps = 9/556 (1%)
Strand = Plus / Minus
Query: 5 gaattctattg-ttccctaaaatataaatttagtttctctctacctaactcaatagtgaa 63
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gaattctattgctt-cctaaaatataaatttagtttctctctacctaactcaatagtgaa 696
Query: 64 gcactacccttcatttctgcaaggatcgggtcaatccctcggaaaacattcctaaaaaca 123
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 695 gcactaccc-----ttctgcaaggatcgggtcaatccctaggaaaacattcctaaaaaca 641
Query: 124 cactggacacaattttccatcctgaaaatgttctcagtgcttggaaatgtcttaagtttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cactggacacaattttccatcctgaaaatgttctcagtgcttggaaatgtcttaagtttg 581
Query: 184 ccgatcattgcccagattctacgcagctagacgttctcctcctcagacacgccctccact 243
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 580 ccgatcattgcccagattctacgcagctagaagttctcctcctcagacacgccctccact 521
Query: 244 ttactccacacggtggcgccagaaggtcttgaacgctgcgggtgagacccacagcgttgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttactccacacggtggcgccagaaggtcttgaacgctgcgggtgagacccacagcgttgt 461
Query: 304 caattggcagcaagctctcaaactgcacacttaagaatctaaacgtgcgc--tactcaca 361
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 460 caattggcagcaagctctcaaactgcacacttaagaatctaaacgtgcgctatactcaca 401
Query: 362 gacagcaatgctacggggtttttgctattaactattctgagctgagtaaggtataaacaa 421
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 400 gacagcaatgctacggggtttttgttattaactattctgagctgagtaaggtataaacaa 341
Query: 422 tgaaggataaggagtaaaaatatgtttatgaggaggtttagaaagtctgtagagtccaga 481
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 340 tgaaggataaggagtaaaaatatgtttatgaggaggtttaaaaagtctgtagagtccagc 281
Query: 482 tgttcagtaagctgtaacttagctaactcaaagctcctatgggcaaaggctttttaccaa 541
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgttcagtaagctgtaacctagctaactcaaagctcctatgggcaaaggctttttaccaa 221
Query: 542 ggttatgtcacatttt 557
||||||||||||||||
Sbjct: 220 ggttatgtcacatttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 954
Length adjustment: 10
Effective length of query: 547
Effective length of database: 944
Effective search space: 516368
Effective search space used: 516368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_i12.g1 MSMg01no411_i12.g1 CHROMAT_FILE:
MSMg01no411_i12.g1 PHD_FILE: MSMg01no411_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:37 2005
(240 letters)
>mm_chr3_146345192_146345831
Length = 640
Score = 342 bits (177), Expect = 9e-99
Identities = 186/189 (98%)
Strand = Plus / Plus
Query: 1 aaatcaggaggtacgatttgacacagtgaaataaaaccaggctggcttgcagccaacatg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatcaggaggtacaatttgacacagtgaaataaaaccaggctggcttgcagccaacatg 260
Query: 61 acgttaggaatcgcacacaagccgcaactgccttctggttggttcatggctgacttttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgttaggaatcgcacacaagccgcaactgccttctggttggttcatggctgacttttta 320
Query: 121 aagctacagcgtgccctgctcactttggctaactaccttcagcgcaattagcgtgagggg 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aagctacagcgtgccctgttcactttggctaactaccttcagcgcaattagcgggagggg 380
Query: 181 atgattccc 189
|||||||||
Sbjct: 381 atgattccc 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
