BAC Information

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BAC

Clone NameMSMg01-411J12
Chromosome3 (Build37)
Map Location 120,141,445 - 120,141,728
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411J12.T7 (MSMg01no411_j12.b1)MSMg01-411J12.TJ (MSMg01no411_j12.g1)
ACCAG508567AG508568
length747743
length of high quality
(start - end)
284 (328 - 611)239 (74 - 312)
definitionCHROMAT_FILE: MSMg01no411_j12.b1 PHD_FILE: MSMg01no411_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:42 2005CHROMAT_FILE: MSMg01no411_j12.g1 PHD_FILE: MSMg01no411_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAGAGAGGATCCG
CGGAATTCTATTTTGCACGCAAGAGTAACAGAAGTTACCCTTTCTTCTCT
CAACTAAAACAAAACAAAATACACACACACACAAAAAAAACCCCAAGCAA
AAACCACCACCAACACCACCAACACCACCACCAACAACAACAACAAGTAC
AAATACAGGTTGAAGAGAAATATCATTTGCTTCAGAGTCAAAGAGGAAAT
TAAGACTCGGTCTCAGACATTGAACCCATCATGTTGGAATCCAGTACTAA
ACAGAGCTCCATGTCCAGTTTTTATTCTCTGGACCCCTATTGGCTCAACA
TTCAAAGAACTGCATCCAACAGCTGTCCATCAACAGGGGGTAGCACAACA
CAAACAAGGAATCCATATGTTTTAGAATAGTTCAATGAAATACACATAGA
CTTTACCTTGAAAATGGATGACAGGGTGGGAAATCCTGAAGAAGCTACCA
ATATTCTCTGTCCTTAGAACAACGGCCTTTTATGAAGCTTCCAAATGCAT
CCTGGTGATAGGCAGAGATCAACAGCCTGGTTTTTATTCCAGTGGGAGGG
ACCTGTGGTTGTTTGCAGTGGTGCTGGTTACGGAGCACGAACAGCACATG
TTTTGCTCCTACTCCTGTGCTACCAAGGTCAGAGTGTGTTGTGAACTTCA
GCTACACAACGTGTTACAGCATTTGTGGTCTTTGAAATGACATCCCT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAACTC
AGTCTGGCGGTTCTTTTTATAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGACG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATATGTG
GATATTAGCCCCAAACCCAGGATACCCAAGATATAAGATATAATTTGCTA
AACACCTGATACTCTTGAAGAATGAAGACTGAAGTGGGCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_j12.b1 MSMg01no411_j12.b1 CHROMAT_FILE:
MSMg01no411_j12.b1 PHD_FILE: MSMg01no411_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:42 2005
         (284 letters)



>mm_chr3_120141245_120141928
          Length = 684

 Score =  495 bits (256), Expect = e-144
 Identities = 277/284 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggacccctattggctcaacattcaaagaactgcatccaacagctgtccatcaacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tctggacccctattggctcaacattcaaagaactgcatccaacagctgtccatcaacagg 425

                                                                       
Query: 61  gggtagcacaacacaaacaaggaatccatatgttttagaatagttcaatgaaatacacat 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 424 gggtagcacaacacaaacaaggaatccatctgttttagaatagttcaatgaaatacacat 365

                                                                       
Query: 121 agactttaccttgaaaatggatgacagggtgggaaatcctgaagaagctaccaatattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 364 agactttaccttgaaaatggatgacagggtgggaaatcctgaagaagataccaatattct 305

                                                                       
Query: 181 ctgtccttagaacaacggccttttatgaagcttccaaatgcatcctggtgataggcagag 240
           ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 304 ctgtccttagaacaacgcccttttatgaagctaccaaatgcatcctggtgataggcaggg 245

                                                       
Query: 241 atcaacagcctggtttttattccagtgggagggacctgtggttg 284
           ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 244 atcaacagcctggtttttattccagtgagaggggcctgtggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)