BAC Information

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BAC

Clone NameMSMg01-411J23
Chromosome3 (Build37)
Map Location 95,764,197 - 95,764,660
singlet/doubletsinglet
Overlap geneLOC100042897
Upstream geneRfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e
Downstream geneLOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411J23.T7 (MSMg01no411_j23.b1)MSMg01-411J23.TJ (MSMg01no411_j23.g1)
ACCAG508589AG508590
length797762
length of high quality
(start - end)		107 (66 - 172)494 (56 - 549)
definitionCHROMAT_FILE: MSMg01no411_j23.b1 PHD_FILE: MSMg01no411_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:44 2005CHROMAT_FILE: MSMg01no411_j23.g1 PHD_FILE: MSMg01no411_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAACTAATTACTTCGAATGTCTGAGAAACACTGAAAAAAAAAGTTTAA
AGTCCTTAATGATCAGGGAAACGGCAAATTCTACCTTACACCGATCAGAA
TGACTAAGATCAAAACCTCAGGGCCACCTATTGANCAGGATGTGGAGAAN
GAGAACACTTCCTCCATTGCGGAGATGAGTGCCCGNNNNNNNNNNAAAAT
CAACCNNNNNNNNNATATGAGTTGCCNCCTTNTTNNNNACGTNTTTTGGA
ACAAAAAGATTTGTNNNNNNNNTTGGGNNNCANAGGACTATTTTTTTGGT
CCCCTCTTCTTTTCTTTGTTTGTGGGGGCTGGGGCCCCCCCCCCCCTCCC
CCTTCTTTCTNCCCCNTTTNTTTTCTTTTTTTATNNNNNNNNNNNNNNNC
TTTNNATCCCCCCCCCCTCCCTTTTTTTTTTTTTNTTATTCTAAACAAAC
ATCTTCCCTCTTTCTCTTCTCTCCTTTCCTCCTCCCTCGATAAGTAGTTG
GTGGGTTGGTTTTTTTCTCCCCNCTTCCCCCCCTCCCTTCTCTTCTTCCT
TTCCTTTCTCCCCCTTCCTCTCATTCTCCCTTTCCCTTTTTTCTTCCTTC
TTTTTTCTTTCTCCTCTTCCTTCCCTTCCCTTCCCTTTCTCCTCCTTTTC
CTTTCCTTTCCCCCTTTTCTTTCTCCTCTTTCTCCTTTTTCCCTTTATCC
TTTATCTTTCTCTTTTCTATTACTATTTCACATTCACATTGCAGTAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAGACCATTGTCGGACTGGAGGGAGATTGGGATTCCAAATGGAGA
GATGATCTCTCAGACGGGGAGGTCAGAGACTGTCTGAGCCCTTTTGTGGG
GGGTGGGCAATGCCTCCACTCACCCTAGTACTTCTCCAGCGTGAGATCTG
ACACATGGTGTGACTTTATGGCATCTGTTACCTAAAGCATAACAAATGTG
ACTTTCAAGACAAGAGATGCATGAGGCACCAGGGGACACACAGAGTAATT
ATTGTCATTGTTGTCCATCATTGTGTATGCTGTGACACCAACTAACTACC
CAGTGTAAGGCAGAATCTACAGGGTAAAGGTGGAGCCCATCACAAGCGGT
CCCCTCTTCAGACACCCACTACAAGACGTATGGCAATACCTCTGTCCAGC
CAACTGCCAGTTCCAAACGCAGCAGTTTACCCGCACAACTCAGAACCCAC
AGAGGTCTTCACTGCACTTACCCGCACAACTCAGAACCCACAGAGGTCTT
CACTGCACTTACTTTTTTTTTTTTGGNTTTTCAAGACAGGGTTTCTCCTG
TGTACCCTGGCTGTCCTGGAACTCACTTTGTAAACCAGGTTGTGCTCTAA
TTAAAAAACCACCTGTCTCTGTCTCCCAGGGTGCAAAATTAAGGGTGCGC
CCACCAATTTTCTTTCCTATAATTTTTTTATTGTGTGGCTGGCTCTCTCG
TTCCTCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_j23.g1 MSMg01no411_j23.g1 CHROMAT_FILE:
MSMg01no411_j23.g1 PHD_FILE: MSMg01no411_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:44 2005
         (494 letters)



>mm_chr3_95763997_95764888
          Length = 892

 Score =  859 bits (444), Expect = 0.0
 Identities = 460/466 (98%), Gaps = 2/466 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaccattgtcggactggagggagattgggattccaaatggagagatgatctctcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aagaccattgtcggactggagggagattgggattccaaatggagagatgatctctcagac 605

                                                                       
Query: 61  ggggaggtcagagactgtctgagcccttttgtggggggtgggcaatgcctccactcaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ggggaggtcagagactgtctgagcccttttgtggggggtgggcaatgcctccactcaccc 545

                                                                       
Query: 121 tagtacttctccagcgtgagatctgacacatggtgtgactttatggcatctgttacctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tagtacttctccagcgtgagatctgacacatggtgtgactttatggcatctgttacctaa 485

                                                                       
Query: 181 agcataacaaatgtgactttcaagacaagagatgcatgaggcaccaggggacacacagag 240
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agcata--aaatgtgactttcaagacaagagatgcatgaggcaccaggggacacacagag 427

                                                                       
Query: 241 taattattgtcattgttgtccatcattgtgtatgctgtgacaccaactaactacccagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taattattgtcattgttgtccatcattgtgtatgctgtgacaccaactaactacccagtg 367

                                                                       
Query: 301 taaggcagaatctacagggtaaaggtggagcccatcacaagcggtcccctcttcagacac 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 366 taaggcagaatctacagggtaaaggtagagcccatcacaagcggtcccctcttcagacac 307

                                                                       
Query: 361 ccactacaagacgtatggcaatacctctgtccagccaactgccagttccaaacgcagcag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 306 ccactacaagacgtatggcaatacctctgtccagccaactgccagttccaaatgcagcag 247

                                                         
Query: 421 tttacccgcacaactcagaacccacagaggtcttcactgcacttac 466
           ||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 246 tttacccacacaactcagaacccacagaggccttcactgcacttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 892
Length adjustment: 10
Effective length of query: 484
Effective length of database: 882
Effective search space:   426888
Effective search space used:   426888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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