Query= MSMg01no411_o03.b1 MSMg01no411_o03.b1 CHROMAT_FILE:
MSMg01no411_o03.b1 PHD_FILE: MSMg01no411_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:05 2005
(656 letters)
>mm_chr3_68975332_68976386
Length = 1055
Score = 1199 bits (620), Expect = 0.0
Identities = 644/652 (98%), Gaps = 1/652 (0%)
Strand = Plus / Minus
Query: 5 gaattcattgaattttctcctccttatgtttttcataaaggaaatgggggacatctgtac 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 gaattcattgaaaattctcctccttatgtttttcataaaggaaatgggggacatctgtac 994
Query: 65 tttgtcatttacatgtttattaaggaagaccaagttatttcggccttgtgccctgatgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 tttgtcatttacatgtttattaaggaagaccaagttatttcggccttgtgccctgatgcc 934
Query: 125 tggagctcattgcaacaacagagtggcttttatacttacaatagtaagtgaagatatagg 184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 933 tggagctcattgcaacaacagagtaccttttatacttacaatagtaagtgaagatatacg 874
Query: 185 ttagtccagaattatctgagttaataaatttacagtgttggggcctgagggatgctgcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ttagtccagaattatctgagttaataaatttacagtgttggggcctgagggatgctgcat 814
Query: 245 ggtttctaatgcaaactgctcttgcagaggacctgagtttggttcctagcacccatgtca 304
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 813 ggtttctaatgcaaactgctcttgcagaggacctgagtttggtttctagcacccatgtca 754
Query: 305 agtggcccacaacatgtaactccagcgccagggaggtccaacatatctgacctccttcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 agtggcccacaacatgtaactccagcgccagggaggtccaacatatctgacctccttcca 694
Query: 365 caaagatacacacataatttaaaaataacaaaacagatcttaaaacttatagtgttaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 caaagatacacacataatttaaaaataacaaaacagatcttaaaacttatagtgttaaat 634
Query: 425 taccacctgtcagaatttaaacaaatcaatgctttttttttataaattaaaagagatatc 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 633 taccacctgtcagaatttaaacaaatcaatgc-ttttttttataaattaaaagagatatc 575
Query: 485 ttatacctttagactggcaagaagatgtcacattcaaggctagcctgggccacatagaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttatacctttagactggcaagaagatgtcacattcaaggctagcctgggccacatagaga 515
Query: 545 gaccctatctcagaaaacaaaaccaactgaagtccctgttgggggctgaaggttagggcc 604
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 514 gaccctatctcagaaaacaaaaccaactaaagtccctgttgggggctgaaggttagggcc 455
Query: 605 atggctcagtggataagactccttgctgcacaaacatagagatctgagttca 656
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atggctcagtggataagactccttgctgcacaaacatagagatctgagttca 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space: 675070
Effective search space used: 675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_o03.g1 MSMg01no411_o03.g1 CHROMAT_FILE:
MSMg01no411_o03.g1 PHD_FILE: MSMg01no411_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:05 2005
(656 letters)
>mm_chr3_68810065_68811120
Length = 1056
Score = 1170 bits (605), Expect = 0.0
Identities = 641/657 (97%), Gaps = 9/657 (1%)
Strand = Plus / Plus
Query: 1 catgcagtttgctctaacggttctggaagatatgagagtgagcggaaaacttgcgttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcagtttgctctaacggttctggaagatatgagagtgagcggaaaacttgcgttgtg 260
Query: 61 agtttctgtgttttagagtagtactgacctctttctcatatttccgctgaaagcggcata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttctgtgttttagagtagtactgacctctttctcatatttccgctgaaagcggcatg 320
Query: 121 ggtgctgagcgcctctgcgcccttagactggagtgaatgtgatgtggagttgcgtgactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgctgagcgcctctgcgcccttagactggagtgaatgtgatgtggagttgcgtgactc 380
Query: 181 aacctttactgttggattgtcttttggggcgcaatactaatttttactttataaagtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccctttactgttggattgtcttttggggcgcaatactaatttttactttataaagtgtg 440
Query: 241 tcagtgttgggtgacgcgggcatatgtacatgagtgcaggtgcccctggagggcatgaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtgttgggtgacgcgggcatatgtacatgagtgcaggtgcccctggagggcatgaac 500
Query: 301 ctcgagcatcccattgtgggtgctgaaaaccaaacttgggttctacacaagaaaaaaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcgagcatcccattgtgggtgctgaaaaccaaacttgggttctacacaagaaaaaaatt 560
Query: 361 gctgggccccctagattgcctttaaagagaaggtataattgagagcgtaaagc-ggtcgg 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct: 561 gctgggccccctagattgcctttaaagagaaggtataattgagagcgtagagcagg-cgg 619
Query: 420 agggtagaaactaagagctactgtgaaattcctgtgaccatgttactgaagtttgtgagt 479
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 620 agggtagaaattaagagctactgtgaaattcctgtcaccatgttactgaagtttgtgagt 679
Query: 480 ttcttaagctgagccatgtggagagttggattttcgattgttagggttgcatctcctgtc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcttaagctgagccatgtggagagttggattttcgattgttagggttgcatctcctg-- 737
Query: 540 tcaggcatcagggaatccgtttgttgcaaggttttctttatgggatattgagtattttga 599
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 738 -----catcagggaatccgtttgttgcaaggttttctttatggtatattgagtattttga 792
Query: 600 ctcctctaagtacaatgtgtataccacacattttgtgactggtctgattgctttcac 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ctcctctaagtacaatgtgtataccacacattttgtgactggtctgattgctttcac 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
