Query= MSMg01no412_c18.b1 MSMg01no412_c18.b1 CHROMAT_FILE:
MSMg01no412_c18.b1 PHD_FILE: MSMg01no412_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:27 2005
(506 letters)
>mm_chr3_41272742_41273646
Length = 905
Score = 942 bits (487), Expect = 0.0
Identities = 501/506 (99%), Gaps = 1/506 (0%)
Strand = Plus / Minus
Query: 1 tgttcattgctacgtcctagtctatctttcgatttgcttaagtggtaatgcttggtaaca 60
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 705 tgttcattgctacgtcctagtctatcttttgatttgcttgagtggtaatgcttggtaaca 646
Query: 61 tatggatatatacggggcattgaactggagtacctgctttaaaatctctcatgcattctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 645 tatggatatatacggggcattgaactggagtacctgctttaaaatctctcatgcattc-t 587
Query: 121 ttgggagtggaatcatgcatcgtgctgcctagtggcagagtagaaagaataaggagacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ttgggagtggaatcatgcatcgtgctgcctagtggcagagtagaaagaataaggagacag 527
Query: 181 tgagcacatgcgtctgcaaccgtgagctatgaaagcagccactttgcaaccagagactgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgagcacatgcgtctgcaaccgtgagctatgaaagcagccactttgcaaccagagactgt 467
Query: 241 gattcatcttgaccttgacatgcctgacgtctttaataacctactaaagcccgggctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gattcatcttgaccttgacatgcctgacgtctttaataacctactaaagcccgggctttg 407
Query: 301 gtttcactagctttaaaggagattaatactcttataaaattgtcaaaattagcatatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtttcactagctttaaaggagattaatactcttataaaattgtcaaaattagcatatttg 347
Query: 361 gaaacatcttggtcttcttgaagctcatgggtactcaaaaaatcaaatgcttccaggcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gaaacatcttggtcttcttgaagctcatgggtactcaaaaaatcaaatgcttccaggcta 287
Query: 421 cctgtctaggaagcaagcccattgctgaataatgcatgcaaaacattctgactganaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 286 cctgtctaggaagcaagcccattgctgaataatgcatgcaaaacattctgactgaaaata 227
Query: 481 actaccacttttgcattctctgaaag 506
| ||||||||||||||||||||||||
Sbjct: 226 agtaccacttttgcattctctgaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 905
Length adjustment: 10
Effective length of query: 496
Effective length of database: 895
Effective search space: 443920
Effective search space used: 443920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_c18.g1 MSMg01no412_c18.g1 CHROMAT_FILE:
MSMg01no412_c18.g1 PHD_FILE: MSMg01no412_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:27 2005
(100 letters)
>mm_chr3_41083476_41083975
Length = 500
Score = 194 bits (100), Expect = 2e-54
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 caggtaagtctgtggattagaagcttcctctttatgaattaagggaggacaagtgtcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtaagtctgtggattagaagcttcctctttatgaattaagggaggacaagtgtcagg 260
Query: 61 atgaggaaagatagggttctatcctaaagacagagaaccc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaggaaagatagggttctatcctaaagacagagaaccc 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space: 45264
Effective search space used: 45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
