BAC Information

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BAC

Clone NameMSMg01-412G04
Chromosome3 (Build37)
Map Location 153,141,854 - 153,318,129
singlet/doubletdoublet
Overlap geneSt6galnac3
Upstream geneAk5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
Downstream geneEG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412G04.T7 (MSMg01no412_g04.b1)MSMg01-412G04.TJ (MSMg01no412_g04.g1)
ACCAG509171AG509172
length788771
length of high quality
(start - end)		249 (72 - 320)440 (80 - 519)
definitionCHROMAT_FILE: MSMg01no412_g04.b1 PHD_FILE: MSMg01no412_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:43 2005CHROMAT_FILE: MSMg01no412_g04.g1 PHD_FILE: MSMg01no412_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,317,881 - 153,318,129)(153,141,854 - 153,142,293)
sequence
GGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGTAATTTTCGGACACTCTCCAGCACACTCGGACTGAGCATA
GCGACGCCTAAAAGTGTTGTAAGTTATGCACGTTTTTGTTTAAGCATCCC
CAATGAGAGAAGAGTGTACTCCTGGAGCTCTCCTTGGGCAAGCTGTCCAT
CCAGCCCGCTCCTTCCACTGCATACACTCCTGGCTTATAATCCATGGAGA
ATGCTCCCCTGAGGTATGACAAGAGGTGACCGGAAGGGGAGCAGTACTTT
CTTTGTTCTCTGGCGGGGAGATTGATTGGAAGGGGTTGGTGTGAGTCACC
TGACAGGAGTTTCCATGTAGTGAGAGTTTAAGTTTACCTGACTGAAGAGC
GACAGTTTAGTAAAAACACCTGCGATGGTTTGTATATGCTTGGCCCACGG
AGTGGCACTATTACGTGAGTTCTTGTTGGAGTAGGCGTGTCTCTGTTTTT
GTTGTCCCCACCATTCACTCTTCCTATTCTTTCCTTCTCTACTTTTTCCT
CATTGTCCATCCTTACGCTTTTTCTATTTCCTCTTGCCTCTATGACTTGT
TTTTTTCCCTTATTTCGCCCTTACCTCCCCTCCTCCACTTTTTTTACTTT
TCCGTTCTTTTCTCACCCCTTTTCTTTTATCTCTCCCCCGCCACCCGCAA
TCCCTCTTTCACCTTCTTACATCTCGCCTTCCCCCCCCTACCCACTTTCT
ACATCTCCCACCAATAATATATTCCCACACCCTTCTCC

NNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATTTAGCCATCTTATTGAC
AATTCAGTTCTGCGCCGGCATCTCACTCTGTAGCCCAGTCTATCCTACAG
CTCCTGGTCCTGCTTCCTCATCCTCCAAGTGTTGAGATTCCTGGCAGGAG
CAAGGCGCCATAGCCAAGGCGCCATAGCCAATTTTGATGATTCTAGTTAG
ATAGGCCACTGTTCTAGAGCTGAAGACATCTGTGTCAGCGACTGCTTTCA
GACGTGTCACTCAGAGAGCACTTCCTACGTCCTTACTCACGATCTTATCC
AGTTTTAGTTGTAACTTTAAAACAATGAAGGCTTAAATATATCTTTTGAA
CCCAGTACTTAATAAATCTTGCAAGGGAGCTATAAGCATAAGCCACTATT
TTAACCTTGTTTTAAAAATGTAGCTTTCGGAGTGAGTTGGGTTTTTCCCT
CGGTGTTTTGTTTGTTTTTGTTCTGTTTCACTTTTTTATTTCTGCTTTGA
TTTTTGAGGACGACTTTCGTCCTCCTCGGCTGGCTCTGATATTTTTTACA
TACCTCTGCATGGCCTTCCTATTTCTCTAATTCCCCGCCTTCCTCTATCA
ATTTGCGGTATTTTTTTGCCCTTCCCTTCTTCCAATCGTTGTTATTTATT
TGTTGAAACTGTATTCCCTATTTCTCTTCAATTTTGCGACCAAACAAATT
TAAATTTTTACCGCCCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_g04.b1 MSMg01no412_g04.b1 CHROMAT_FILE:
MSMg01no412_g04.b1 PHD_FILE: MSMg01no412_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:43 2005
         (249 letters)



>mm_chr3_153317681_153318329
          Length = 649

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctccagcacactcggactgagcatagcgacgcctaaaagtgttgtaagttatgcac 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cactctccagcacactcgggctgagcatagcgacgcctaaaagtgttgtaagttatgcac 390

                                                                       
Query: 61  gtttttgtttaagcatccccaatgagagaagagtgtactcctggagctctccttgggcaa 120
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 389 gtttttgtttaagcatccccaatgagagaagagcctactcctggagctctccttgggcaa 330

                                                                       
Query: 121 gctgtccatccagcccgctccttccactgcatacactcctggcttataatccatggagaa 180
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 329 gctgtccatccagcccgctccttccactgcacacactcctggcttagaatccatggagaa 270

                                                                       
Query: 181 tgctcccctgaggtatgacaagaggtgaccggaaggggagcagtactttctttgttctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgctcccctgaggtatgacaagaggtgaccggaaggggagcagtactttctttgttctct 210

                    
Query: 241 ggcggggag 249
           |||||||||
Sbjct: 209 ggcggggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no412_g04.g1 MSMg01no412_g04.g1 CHROMAT_FILE:
MSMg01no412_g04.g1 PHD_FILE: MSMg01no412_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:43 2005
         (440 letters)



>mm_chr3_153141654_153142493
          Length = 840

 Score =  797 bits (412), Expect = 0.0
 Identities = 433/440 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttagccatcttattgacaattcagttctgcgccggcatctcactctgtagcccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatttagccatcttattgacaattcagttctgcgccggcatctcactctgtagcccagt 260

                                                                       
Query: 61  ctatcctacagctcctggtcctgcttcctcatcctccaagtgttgagattcctggcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatcctacagctcctggtcctgcttcctcatcctccaagtgttgagattcctggcagga 320

                                                                       
Query: 121 gcaaggcgccatagccaaggcgccatagccaattttgatgattctagttagataggccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaggcgccatagccaaggcgccatagccaattttgatgattctagttagataggccac 380

                                                                       
Query: 181 tgttctagagctgaagacatctgtgtcagcgactgctttcagacgtgtcactcagagagc 240
           | ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 381 tcttctagagctgaagacatctgtgtcagcgactgctttcagacacgtcactcagagagc 440

                                                                       
Query: 241 acttcctacgtccttactcacgatcttatccagttttagttgtaactttaaaacaatgaa 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttccaacgtccttactcacgatcttatccagttttagttgtaactttaaaacaatgaa 500

                                                                       
Query: 301 ggcttaaatatatcttttgaacccagtacttaataaatcttgcaagggagctataagcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcttaaatatatcttttgaacccagtacttaataaatcttgcaagggagctataagcat 560

                                                                       
Query: 361 aagccactattttaaccttgttttaaaaatgtagctttcggagtgagttgggtttttccc 420
            |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 gagccactattttaatcttgttttaaaaatgtagctttcgaagtgagttgggtttttccc 620

                               
Query: 421 tcggtgttttgtttgttttt 440
           ||||||||||||||||||||
Sbjct: 621 tcggtgttttgtttgttttt 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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