BAC Information

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BAC

Clone NameMSMg01-412I13
Chromosome3 (Build37)
Map Location 120,088,550 - 120,088,778
singlet/doubletsinglet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412I13.T7 (MSMg01no412_i13.b1)MSMg01-412I13.TJ (MSMg01no412_i13.g1)
ACCAG509284AG509285
length772767
length of high quality
(start - end)
234 (78 - 311)164 (79 - 242)
definitionCHROMAT_FILE: MSMg01no412_i13.b1 PHD_FILE: MSMg01no412_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:55 2005CHROMAT_FILE: MSMg01no412_i13.g1 PHD_FILE: MSMg01no412_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCTAGTTTGCAGACCTGTCAGTGAAGTATTTTACAGTTAATG
ATAAATTCAGAAAATTACTGATGGTGTGAAGGGGCTGCTGTACCAGCATC
TAGTGGTAACTAATTTTTAAACAGGCTTGATGTTCATAACTAAAAGAAAT
ATGGCCACTCATCAATGGAGAGAAACACAAGCCCAAGCCCACTAGTTAGT
TATTTTACCCTAAACCTTAAAAGCCAGAAACACACACAAAAGACATACAC
ACACACACACACACACACATTTTCTCTTTTATACACTCACATACTTCCAT
ATACACTTCAGTGCTTCTTCTTTCTCCCTCCATGTGCTTCTATTTCTGTT
AATACTCATCCTCTTTCCATTAATTGCGTTTATTTGCTCATTCTTTCTTC
CTTACTTTTTCCTTTTTTCCTCATTCCCTTTCCCATTTTATACTTTGTTT
TTTATTTCTCTCGATTGCTCTCTCCTTTCTTTTCCCCCCTTTCCTTTACG
CCTTCACCTTTTTGTTCCACTCTTTTTCCCTCTTTTTCCCCTCTTTCTTA
TTTTTCCCCCTTTTATATTCTTTTTTGCCCCCTATTTCTTTCCCCCCTTC
CCCTTAATACGCACCACTTTTTTTTTTTTTATCCTTTCGCTTTAATCCCT
TCTCTCCTCCATATTATATTTCCCTTCTGATCTCTTTTTCTTTCCCCTCT
TTTCAAATCTCTCCCCCTACTT
NGCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGCATTAGCATCTCAGCC
ACTCAACAGCACTGCAGCAAGTTCATGGACACACAAGGTTGAGCCTGTTG
ACATTTCATCATGGATGAAAGGGGGACCAATGAGGCTCCTCCCATTCCAG
GGAACTATGAGCAATTAATACTTGTTGGGGGGGGTGGAGTGNNNNNTTCT
TCTTTTTTTANNNTATTNNTTGNTGGTGNTTTTTTGTATTTCTTTNTAAT
TTTANTTGGNNNNNANTTTTTTTTTTTTTTGCNAGGGGCCAGAGAGAGCC
GGCACAACCATGTTTTTTTTCCCACCATAGCACTTTGGGCTGTTGTCATT
ACGTTTTTTTTCCTTTCCTCCCCCCCCTTTTCCTATTCCTTTCTCCCCTT
CCCCGGCCCCCTTTTCCTTGTTCCCTTCCTTTTTCCCCCCCCTTTTACTT
CCCTTTCTTCCCCCTTTCCCCCCTCCCTTCTCCCTCCCCCTCCCTTTTTT
TTTCCCTTTCTTTCCCCCTTCTCTTCTCTCCCCCTTTGCTATCCTTTCCC
CCTCTTCCCTTCTCTATATTCTTATTACTTTCCACCCTCATTTACTCCTC
CCCCTATCCCTTCCTTTTCTCTTTCTGTCTCCCCTTTCTTTCTCTCCGCG
ACCTCTTCTTTTCCTCTTGTTCTTTACCCTTCCTTTCACTTTTATTTTTT
CTTTTCCTTTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_i13.b1 MSMg01no412_i13.b1 CHROMAT_FILE:
MSMg01no412_i13.b1 PHD_FILE: MSMg01no412_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:55 2005
         (234 letters)



>mm_chr3_120088350_120088978
          Length = 629

 Score =  422 bits (218), Expect = e-122
 Identities = 228/234 (97%), Gaps = 5/234 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaagtattttacagttaatgataaattcagaaaattactgatggtgtgaaggggctg 60
           |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||
Sbjct: 201 agtgaagtattttacagttaatgat-----cagaaaattactgatggtgtgaaggggctg 255

                                                                       
Query: 61  ctgtaccagcatctagtggtaactaatttttaaacaggcttgatgttcataactaaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgtaccagcatctagtggtaactaatttttaaacaggcttgatgttcataactaaaaga 315

                                                                       
Query: 121 aatatggccactcatcaatggagagaaacacaagcccaagcccactagttagttatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aatatggccactcatcaatggagagaaacacaagcccaagcccactagttagttatttta 375

                                                                 
Query: 181 ccctaaaccttaaaagccagaaacacacacaaaagacatacacacacacacaca 234
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 376 ccctaaaccttaaaagccagaaacacacacaaaagacacacacacacacacaca 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 629
Length adjustment: 9
Effective length of query: 225
Effective length of database: 620
Effective search space:   139500
Effective search space used:   139500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)