Query= MSMg01no412_k05.b1 MSMg01no412_k05.b1 CHROMAT_FILE:
MSMg01no412_k05.b1 PHD_FILE: MSMg01no412_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:04 2005
(554 letters)
>mm_chr3_9644719_9645678
Length = 960
Score = 801 bits (414), Expect = 0.0
Identities = 525/580 (90%), Gaps = 37/580 (6%)
Strand = Plus / Plus
Query: 5 gaattcactctgtaccaccatgctggcctcaaaatcagagatctgcctccttcaagtacc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gaattcactctgtag-accatgctggcctcaaaatcagagatctgcctccttcaagtact 246
Query: 65 gggattaaagtcatacacccccatacaggcct--ctctctctctctctctctctctctct 122
|||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct: 247 gggattaaagtcatacacccacacacaggcctgcctctctctctctctctctctctctct 306
Query: 123 ctctctctaatg-------------agacaagcaatgaagggggatgcgtctaatttaca 169
|||||||| | || ||| ||| |||||||||||||||||||||
Sbjct: 307 ctctctctc-tctctctctctctccaggcaa-caa---agggggatgcgtctaatttacg 361
Query: 170 ggataagattaccagaccgtctttgaggactgattggacacttggaaaagatcttaaata 229
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggataggattaccagactgtctttgaggactgattggacacttggaaaagatcttaaata 421
Query: 230 aacaattgaaa--------tatatatatatatttaattgaaggaaaacagatctattaaa 281
||||||||||| |||||||||||||||||||||||||| ||||| ||| |||
Sbjct: 422 aacaattgaaaaaaaaatatatatatatatatttaattgaaggaatacagacctaggaaa 481
Query: 282 ataaatactgagccaggc-attcttccaggttcctgtgctcatggcagagagtaggaggg 340
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ataaatactgagccaggccat-cttccaggttcctgtgctcatggcagagagtaggaggg 540
Query: 341 gccagcaagccttggaatataacccacagacaagctagatacccagca------gtccac 394
|||||||||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct: 541 gccagcaagccttggaatataacccacagacaagctaggtgcccagcaaggcctgtccac 600
Query: 395 cacagagttgctgaagtggggtatttaagtgggaatactgccgggactcatgttgtgagg 454
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 601 cacagagttgctgaagtggggtatttaagtgggaatactgccggaactcatgttgtgagg 660
Query: 455 tcaggagtatgtgaattcagagagaaacatgaccgcattatttcaggggtctgtgtattc 514
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 661 tcaggagtatgtgaattcagagagaaacttgaccgcattatttcaggggtctgtgtattc 720
Query: 515 ttgaagaaattatcaatcaagagacagtttaagcagttta 554
||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttgaagaaattatcaatcaagagacagtttaagcagttta 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 960
Length adjustment: 10
Effective length of query: 544
Effective length of database: 950
Effective search space: 516800
Effective search space used: 516800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_k05.g1 MSMg01no412_k05.g1 CHROMAT_FILE:
MSMg01no412_k05.g1 PHD_FILE: MSMg01no412_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:04 2005
(486 letters)
>mm_chr3_9831204_9832088
Length = 885
Score = 884 bits (457), Expect = 0.0
Identities = 481/493 (97%), Gaps = 8/493 (1%)
Strand = Plus / Minus
Query: 1 tttgaaataccatacagccctgctgtgtgactgatagacagtgactgttataaagaaaga 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 802 tttgaaataccatacagccctgctgtgtgactgataggcagtgactgttataaagaaaga 743
Query: 61 taatatttagagtaccagctttgcattaaccaaacagctcataatgcagc-------tga 113
||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 742 taatatttagagtaccagctttgcattaaccaaacagctcatattgcagctgccctgtga 683
Query: 114 tacacgtgtatccatagatggaaagaaatatgcacacagaaaaatatatacatgcatatg 173
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tacacatgtatccatagatggaaagaaatatgcacacagaaaaatatatacatgcatatg 623
Query: 174 gatttgaaataaaaactcagggatgtgagtcaatgtgagatttatttaggtgacctttag 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gatttgaaataaaaactcagggatgtgagtcaatgtgagatttatttaggtgacctttag 563
Query: 234 aaagaggcatgtatgggttagagtgcttcagtggatataacaagatgaactaactagtta 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaagaggcatgtatgggttagagtgcttcagtggatataacaagatgaactaactagtta 503
Query: 294 taggcacctggtttaagcatagttattattttaaggattctaagaaaaaaagaaagatta 353
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 502 taggcacctggtttaagcatagttattattttaaggattctaag-aaaaaagaaagatta 444
Query: 354 ttttaacgttgaaaagctagttatcacattgtagtttataggagcattgagtgctgaccc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttttaacgttgaaaagctagttatcacattgtagtttataggagcattgagtgctgaccc 384
Query: 414 ctagaagaaattttgtccaagtgtgggctttcaagagatcaggctgttggcactattgct 473
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ctagaagaaattttgtccaagtgtgggctttcaagagaccaggctgttggcactattgct 324
Query: 474 ggctttgaatctg 486
|||||||||||||
Sbjct: 323 ggctttgaatctg 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
