BAC Information

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BAC

Clone NameMSMg01-412K23
Chromosome3 (Build37)
Map Location 45,035,926 - 45,140,336
singlet/doubletdoublet
Overlap geneLOC100039296
Upstream geneLOC676484
Downstream genePcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412K23.T7 (MSMg01no412_k23.b1)MSMg01-412K23.TJ (MSMg01no412_k23.g1)
ACCAG509398AG509399
length796782
length of high quality
(start - end)		440 (47 - 486)477 (78 - 554)
definitionCHROMAT_FILE: MSMg01no412_k23.b1 PHD_FILE: MSMg01no412_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:08 2005CHROMAT_FILE: MSMg01no412_k23.g1 PHD_FILE: MSMg01no412_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,139,901 - 45,140,336)(45,035,926 - 45,036,402)
sequence
NNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTATTTTGTATCTTTTTTAAGAACAGTTATTTTTCAGATTATA
ATTAGCACTATTTGTATTAGTACACGTGGTTAACTTGGGGATGTTTTAGC
AATATTTTTTCTCTTGACTTGACGTAAATATGCTTTTCATTTTTAGGTGG
CCATAGCCATGGTGAAGGGCTGTATCTCCTCTCCTTAGCATGAGTGCTTA
CATTTCAAGATTTGTTATGCTGTTGAATATTACTGAACGTTTGAGTCTTC
TCTACTTCTGTGCCTATGCTTAACTTGTGTCACTGGCCATGGATAACAAG
CAAATTAGAATGTTGGCATCCTAGGTCCTTGACAGGGAAGGTTCTGTGTC
AAGAATTTTCTACGCTATTAATATTGTCAAGTAGCTGTTTTCTGACATCC
TTAAATACACAAATACATTTACTATGATTTGAAGAAATACCACTCCACCC
ATCAGAGGGGAAACCAATCTTGCTGGTTAACAGAGATTTTTCAGTACCTA
TATATTATATTCCGAAGATGTAGAGTAGGGGTCTTCTAACTATCCCCCCC
TTTTTTAAAACCGGGGATTTTTTTTCCCACCCCTTTTTCACCCCCTCTGA
TTATAATTCCCCCCGGGGGAGCAATCGGGGGGTTCTATTTACCCCCCCCT
CCCTTTCCATCTTGTCTCCTCCTTTTATCTCTATTCCCCCTCTTTTTTTT
CCTTACATCTTCACTCTTTCCCCTTTTTCTCTCCTTCCCCTTCATT

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGAAGCAAACTGGAAACGTA
ACAGTCCTTTATCTTGCAAAAATCTTTGTCACTACTCATCAAAAGTAAAA
GTGGGAAAGCTTTGATGAACCAGGTTGGTGCAATGCATGGATCAAAGTGT
CAGACAGATAGGATCAAAGGGAACACGATGAAGTGGTAATGTTGTGTACC
AGATTTGAAACGGTGGCAATGATGACTGGTTCTCACAGACTGGAACAGGG
AAGCTTTGATTAGCAGACCTTGTTTGTACTGTGGGGGCATCAAAGTGGCA
AATGCCTTACCAAATGGGGCAGAAGGCAATGGCTAATGGACCATCAGCAC
TCACTAGAATTTCAGGACCGAAGTAATGGAAGCCAATGCATGCATCCCAT
CTGCCACATAGGAAAAGAAAGAAAACAGGAGAAAGAACAGTTTAATCCCC
GGAAAACTAGCTGATTATGACACCACTAAAGGATAAAATACCATTATATA
TGTTGTGTGNACCATGAAAATTAAATCACATATTTATTTTTTAAAACATA
AGACTATTGTCAATAACCCCTCAGGGTTCTTCCTGATTTCCCACTTATCC
TGTATATTTGTCTCACACCTTTTTTTCTTAAAAGAAAATATTCTTTGGAT
TTTAGCCTAGGAAATCCTGGTGGGGAAAAAGAATTTCCTCGGGGTGGGTT
TCTTTCCCGAGGCCACTGCTCTAACAAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_k23.b1 MSMg01no412_k23.b1 CHROMAT_FILE:
MSMg01no412_k23.b1 PHD_FILE: MSMg01no412_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:08 2005
         (440 letters)



>mm_chr3_45139697_45140536
          Length = 840

 Score =  797 bits (412), Expect = 0.0
 Identities = 430/436 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattattttgtatcttttttaagaacagttatttttcagattataattagcacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaattcattattttgtatcttttttaagaacagttatttttcagattataattagcacta 581

                                                                       
Query: 65  tttgtattagtacacgtggttaacttggggatgttttagcaatattttttctcttgactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tttgtattagtacacgtggttaacttggggatgttttagcaatattttttctcttgactt 521

                                                                       
Query: 125 gacgtaaatatgcttttcatttttaggtggccatagccatggtgaagggctgtatctcct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 520 gacgtaaatatgcttttcatttttaggtggccatagccatggtgaagggctgtatcccct 461

                                                                       
Query: 185 ctccttagcatgagtgcttacatttcaagatttgttatgctgttgaatattactgaacgt 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 460 ctccttagcatgagtgcttacattccaagatttgttatgctgttgaatattactgaacgt 401

                                                                       
Query: 245 ttgagtcttctctacttctgtgcctatgcttaacttgtgtcactggccatggataacaag 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttgagacttctctacttctgtgcctatgcttaacttgtgtcactggccatggataacaag 341

                                                                       
Query: 305 caaattagaatgttggcatcctaggtccttgacagggaaggttctgtgtcaagaattttc 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 340 caaattagaatgttggcatcctaggtccttgacagggaagcttctgtgtcaagaattttc 281

                                                                       
Query: 365 tacgctattaatattgtcaagtagctgttttctgacatccttaaatacacaaatacattt 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tactctattaatattgtcaagtagctgttttctgacatccttaaatacacaaatacattt 221

                           
Query: 425 actatgatttgaagaa 440
           |||||| |||||||||
Sbjct: 220 actatggtttgaagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no412_k23.g1 MSMg01no412_k23.g1 CHROMAT_FILE:
MSMg01no412_k23.g1 PHD_FILE: MSMg01no412_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:08 2005
         (477 letters)



>mm_chr3_45035726_45036602
          Length = 877

 Score =  891 bits (461), Expect = 0.0
 Identities = 473/477 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagaagcaaactggaaacgtaacagtcctttatcttgcaaaaatctttgtcactactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagaagcaaactggaaacgtaacagtcctttatcttgcaaaaatctttgtcactactc 260

                                                                       
Query: 61  atcaaaagtaaaagtgggaaagctttgatgaaccaggttggtgcaatgcatggatcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaaaagtaaaagtgggaaagctttgatgaaccaggttggtgcaatgcatggatcaaag 320

                                                                       
Query: 121 tgtcagacagataggatcaaagggaacacgatgaagtggtaatgttgtgtaccagatttg 180
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 321 tgtcagacagataggatcaaagggaccacgatgaaatggtaatgttgtgtaccagatttg 380

                                                                       
Query: 181 aaacggtggcaatgatgactggttctcacagactggaacagggaagctttgattagcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacggtggcaatgatgactggttctcacagactggaacagggaagctttgattagcaga 440

                                                                       
Query: 241 ccttgtttgtactgtgggggcatcaaagtggcaaatgccttaccaaatggggcagaaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgtttgtactgtgggggcatcaaagtggcaaatgccttaccaaatggggcagaaggc 500

                                                                       
Query: 301 aatggctaatggaccatcagcactcactagaatttcaggaccgaagtaatggaagccaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatggctaatggaccatcagcactcactagaatttcaggaccgaagtaatggaagccaat 560

                                                                       
Query: 361 gcatgcatcccatctgccacataggaaaagaaagaaaacaggagaaagaacagtttaatc 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 gcatgcatcccatctgccacataggaaaaaaaagaaaacaggagaaagaacagtttaatc 620

                                                                    
Query: 421 cccggaaaactagctgattatgacaccactaaaggataaaataccattatatatgtt 477
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctggaaaactagctgattatgacaccactaaaggataaaataccattatatatgtt 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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