NCCGTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTCAATTACCGTTCATTTCTAATGCAAGTTACATTTGTGA
GGCAAAGTACAAAAGAAATAATTATATATCTGGTCTCATTCTCATGGAGA
ATAATTGGTAAAAATTATGGTTAATATTAGAAGATCTGTTTAATCTTTAT
GTATAAACCAAGTGACTATAATACTTAACTTTTAAATTTTACTTGCATAA
TTAGATTTAAACAGAATGGTAAATGTGTGGCAACTCTAGTATGTTTCTTT
GTTATTGTGATCAATACCATGATCTTTAGCAACTTGAGGAGAAAAAGTTT
TATTTTAGTTCTATTATTGTTTCCCCATCACTGGGGAAAGTCAAAGCAGG
AAATCAAGTAGGGTGTAAACTGAAACAGAGACCAAGGAGAAATGCAGCAA
AGTGGCTTACTTCCTCCTGCTTGCTTACCTGCCTTCCTTATACACCACAG
AACCACTGCCTAGATATAGCACTGCCTAAGAGCCATAATTCAAGTAAAGG
TCCCCCAGACATACCCACATGTCAAACTGATGAAGATAATCCTCAGTTGA
GGTTCCCACTACTAAGCCATGTGTAGGTTTTTATAAGTTTGACAAAAATG
AACTATGATTTTGAATGAGACAGACATCTGATCTGGACGAATGTGTTGTT
TATTTTTCTTGCCCAAATTTTTGAATCCCTTGTTTAATTAAAAATGTCTC
TT

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGGTGTTTA
CCATAAAGGCAAGATGAATTTTGTCAGAAGCTTTTGAGCATCTAATGAAG
TGAACATGTGTTTTTTTTTTCCCCCCTTAGAGTTTGTTTATATAGTGGAT
TACATTGCTGGCTTTCCTTATATTGAATGATCCCTGCATCCTTTGCATGA
TGGCTACTTGATCATGGTGAATGATCATTTTGGTGTCTCCTTAGATTTGG
TTTGTGACAGTTTTATGGAGTATTTTTGCATCAATATTCCTAACGGGAAT
TGGACTGAAGTTCTCTTTCTTTGTTGGGTCTTTGTGTAGTTTATGTGTAA
GTATAAATCTGGTTTCATGAAACAAATGTTTCTTCTGTTTCTATTTTGTG
CAATAGTTTGAAGAGTATTGGTATTAGGTCTTCTTTGAAGGGCAGATTGA
ATTCTGCATTAAAACCATCTGGGCATGGACTTTCTTTGATTGGAAACTTT
AAATGAAAACTTGTATTTTCCTAAAAGGCTGCGGAACTGGTTTATTCTGT
TTACCTGATCCCAACAAACTTTTTTTACTCTCCTATAATCTCACAAAATG
TTACCTTCATCCCCATCCTCCCGTTGAATCAATGCGCTTCTTTTTTATTC
TTTTTTTTCCGCTCCTCCCTTTTCCCTTTTGTTCTCTTTACCTCGCTTAT
TTCCCTTCCCCCTCTCCCCTTTTA

Query= MSMg01no412_n06.b1 MSMg01no412_n06.b1 CHROMAT_FILE:
MSMg01no412_n06.b1 PHD_FILE: MSMg01no412_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:19 2005
         (547 letters)



>mm_chr3_13153243_13154190
          Length = 948

 Score =  984 bits (509), Expect = 0.0
 Identities = 536/545 (98%), Gaps = 1/545 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttcaa-ttaccgttcatttctaatgcaagttacatttgtgaggcaaagtaca 62
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttcaaattactgttcatttctaatgcaagttacatttgtgaggcaaagtaca 263

                                                                       
Query: 63  aaagaaataattatatatctggtctcattctcatggagaataattggtaaaaattatggt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaagaaataattatatatctggtctcattctcatggagaataattggtaaaaattatggt 323

                                                                       
Query: 123 taatattagaagatctgtttaatctttatgtataaaccaagtgactataatacttaactt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taatattagaagatctgtttaatctttatgtataaaccaagtgactataatacttaactt 383

                                                                       
Query: 183 ttaaattttacttgcataattagatttaaacagaatggtaaatgtgtggcaactctagta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 ttaaattttacttgcataattagatttaaacagaatggtaaatgtgtggcaacactagta 443

                                                                       
Query: 243 tgtttctttgttattgtgatcaataccatgatctttagcaacttgaggagaaaaagtttt 302
           ||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||
Sbjct: 444 tgtttctttgttattgtgatcaataccatgaccaaaagcaacttgaggagaaaaagtttt 503

                                                                       
Query: 303 attttagttctattattgtttccccatcactggggaaagtcaaagcaggaaatcaagtag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attttagttctattattgtttccccatcactggggaaagtcaaagcaggaaatcaagtag 563

                                                                       
Query: 363 ggtgtaaactgaaacagagaccaaggagaaatgcagcaaagtggcttacttcctcctgct 422
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtgtgaactgaaacagagaccaaggagaaatgcagcaaagtggcttacttcctcctgct 623

                                                                       
Query: 423 tgcttacctgccttccttatacaccacagaaccactgcctagatatagcactgcctaaga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcttacctgccttccttatacaccacagaaccactgcctagatatagcactgcctaaga 683

                                                                       
Query: 483 gccataattcaagtaaaggtcccccagacatacccacatgtcaaactgatgaagataatc 542
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gccataattcaagtaaagttcccccagacatacccacatgtcaaactgatgaagataatc 743

                
Query: 543 ctcag 547
           |||||
Sbjct: 744 ctcag 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space:   503706
Effective search space used:   503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)