Query= MSMg01no412_n11.b1 MSMg01no412_n11.b1 CHROMAT_FILE:
MSMg01no412_n11.b1 PHD_FILE: MSMg01no412_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:20 2005
(496 letters)
>mm_chr3_83623060_83623960
Length = 901
Score = 907 bits (469), Expect = 0.0
Identities = 491/501 (98%), Gaps = 5/501 (0%)
Strand = Plus / Plus
Query: 1 ctggagctgggtggtacaatttgataaagagaactttatagtctccagttttaaaaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggagctgggtggtacaatttgataaagagaactttatagtctccagttttaaaaagga 260
Query: 61 agataacaagaacagcaacaaaaccgagttattgagcaaatgcataactaccctgtaaaa 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 agataacaagaacagcaacaaaaacgagttattgagcaaatgcataactaccctgtaaaa 320
Query: 121 tattatggtgttagtatttcccaagcacctgccatctcctacccaaccaaaatgccacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattatggtgttagtatttcccaagcacctgccatctcctacccaaccaaaatgccacat 380
Query: 181 tcttacttccttctacattgctttttccatagactcaaatctaaagactgcatggatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttacttccttctacattgctttttccatagactcaaatctaaagactgcatggatttg 440
Query: 241 gagattgtatccttgttctatggcctttactatggaatatggactttgctgagatctgct 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagattggatccttgttctatggcctttactatggaatatggactttgctgagatctgct 500
Query: 301 cagaccacatggcatctactctaggggtaagaggggttttctttgttt-----atttatt 355
||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 501 cagaccacatgacatctactctaggggtaagtggggttttctttgtttgatttatttatt 560
Query: 356 taaatggaggaggaagcagccccatcttctacatcagtcccttcagcactgtcatggttc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatggaggaggaagcagccccatcttctacatcagtcccttcagcactgtcatggttc 620
Query: 416 tccagacccattgctccctggagtcacattctatcaagaactatttgttgttagtttatt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccagacccattgctccctggagtcacattctatcaagaactatttgttgttagtttatt 680
Query: 476 agaaaatacatccctagggcc 496
||||||||||||||||||||
Sbjct: 681 ggaaaatacatccctagggcc 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 901
Length adjustment: 10
Effective length of query: 486
Effective length of database: 891
Effective search space: 433026
Effective search space used: 433026
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_n11.g1 MSMg01no412_n11.g1 CHROMAT_FILE:
MSMg01no412_n11.g1 PHD_FILE: MSMg01no412_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:20 2005
(435 letters)
>mm_chr3_83789613_83790449
Length = 837
Score = 787 bits (407), Expect = 0.0
Identities = 429/437 (98%), Gaps = 2/437 (0%)
Strand = Plus / Minus
Query: 1 tctggattaaatcccttatgttccaaatagctagcttgtttcatgcaacctgagactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tctggattaaatcccttatgttccaaatagctagcttgtttcatgcaacctgagactgaa 578
Query: 61 aaatattaaggtgagaatgagcttcactggaaggaagcatcttacaggagcagcgagtgg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 577 aaatattaaggtgagaatgagcttcactggaaggaagcatcgtacaggagcagcgagtgg 518
Query: 121 atggatggtcagtggactggagaagctggatgctttgacgagtagatccatgatagctcc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 517 atggatggtcagtggactggagaagccggatgctttgacgagtagatccatgatagctcc 458
Query: 181 cacgccagctttcctgatgggcttagtggaattgcttagtgagaaactgttcctgggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cacgccagctttcctgatgggcttagtggaattgcttagtgagaaactgttcctgggaat 398
Query: 241 tctttatcttatccccggaggttctgatctggggggaccggcgttagttacctttctggg 300
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tctagaccttatccccggaggttctgatctggggggaccggcgttagttacctttctggg 338
Query: 301 tgacagaattcctgaacatgttggctaagggtggaaagattagtttgggctcatggcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgacagaattcctgaacatgttggctaagggtggaaagattagtttgggctcatggcttt 278
Query: 361 agtaatctcattcacgggcggctgggaagc--agagtttgaagggtgtagacatagctgc 418
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 277 aataatctcattcacgggcggctgggaagcagagagtttgaagggtgtagacatagctgc 218
Query: 419 tcccttgaacagttacc 435
|||||||||||||||||
Sbjct: 217 tcccttgaacagttacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 837
Length adjustment: 9
Effective length of query: 426
Effective length of database: 828
Effective search space: 352728
Effective search space used: 352728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
