Query= MSMg01no412_o02.b1 MSMg01no412_o02.b1 CHROMAT_FILE:
MSMg01no412_o02.b1 PHD_FILE: MSMg01no412_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:23 2005
(431 letters)
>mm_chr3_140589476_140590306
Length = 831
Score = 658 bits (340), Expect = 0.0
Identities = 367/376 (97%), Gaps = 1/376 (0%)
Strand = Plus / Minus
Query: 57 tcatttaataattacattaatttgtttttattatttgttcaggatctggagggcaggcat 116
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 831 tcatttaataattacattaatttgttcttattatttgttcaggatctggagggcaggtat 772
Query: 117 gtggca-aatgtgaacgtggactcagaagacaatgtgtggtagccagctctctccttagt 175
|||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 771 gtggcataatgtgaatgtggactcagaagacaatgtgtggtagccagttctctccttagt 712
Query: 176 tcatgtagggagtgaattgaatgtaggtggtgaagcccggaggcaagtgcctccatccac 235
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 711 ccatgtagggagtgaattgaatgtaagtggtgaagcccggaggcaagtgcctccatccac 652
Query: 236 tgagccgtctcactggtacctgttaatatttctgtatcttggttaacagctcttaagttt 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tgagccgtctcactggtacctgttaatatttctgtatcttggttaacagctcttaagttt 592
Query: 296 agtttgtaacttttattttcatcagccacaaatattctgccatatgtggtgctttgtatc 355
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agtttgtaacttttactttcatcagccacaaatattctgccatatgtggtgctttgtatc 532
Query: 356 aaggacaacacaacctcttataaggaaactcaggcccccaaggtaacgctgtttgcagca 415
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaggacaacacaacctcttagaaggaaactcaggcccccaaggtaacgctgtttgcagca 472
Query: 416 catcagaaaatggttg 431
||||||||||||||||
Sbjct: 471 catcagaaaatggttg 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_o02.g1 MSMg01no412_o02.g1 CHROMAT_FILE:
MSMg01no412_o02.g1 PHD_FILE: MSMg01no412_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:23 2005
(495 letters)
>mm_chr3_140363434_140364328
Length = 895
Score = 820 bits (424), Expect = 0.0
Identities = 487/528 (92%), Gaps = 33/528 (6%)
Strand = Plus / Plus
Query: 1 tggaaaagccctgacacagtccatgaatgtctcccttccttttcctatctgacacaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tggaaaagccctgacacagtccatgaatgtctcccttccttttcctatctgacacaagaa 227
Query: 61 tagccctctccttcataagtttgtcatgaaacggactcttagaaattgagatggctcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tagccctctccttcataagtttgtcatgaaacggactcttagaaattgagatggctcagt 287
Query: 121 ggttaaaactgctcttccagaggtcctgagttcaattcccagcaaccacatggtggccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 288 ggttaaaactgctcttccagaggtcctgagttcaattcccagcaaccacatggtggctca 347
Query: 181 caaccatctgtagttggatctgatgccctcttctggtgtgtctgaagagagcaatagtgt 240
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 caactatctgtagtgggatctgatgccctcttctggtgtgtctgaagagagcaatagtgt 407
Query: 241 agtcatacacataacataaaaaaa--tctttattaaaaaattcttatgacacagtgctct 298
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 408 agtcatacacataacataaaaaaaaatctttattaaaaaattcttatgacacagtgcttt 467
Query: 299 tgagaatcacacactcttcttgaatatataaaaaa------------------------- 333
||||||||||||||||| |||||||||||||||||
Sbjct: 468 tgagaatcacacactctccttgaatatataaaaaacaacaacaacaacaacaacaacaac 527
Query: 334 aaa------ttcttcaatcccttacattgctttctctctaacttctttttcagagtcaca 387
||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 528 aaaaacccattctccaatcccttacattgctttctctctaatttctttttcagagtcaca 587
Query: 388 agaacctcgtaaaactaaaagggggactcagcctaccctctgcatatctctaaggcctcc 447
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agaacctcataaaactaaaagggggactcagcctaccctctgcatatctctaaggcctcc 647
Query: 448 cctctccatacttaaagcattggcaattagtgctacttatgcttatag 495
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cctctccatacttaaagcattggcaattagtgctacttatgcttatag 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
