Query= MSMg01no413_f19.b1 MSMg01no413_f19.b1 CHROMAT_FILE:
MSMg01no413_f19.b1 PHD_FILE: MSMg01no413_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:01 2005
(563 letters)
>mm_chr3_52095371_52096333
Length = 963
Score = 963 bits (498), Expect = 0.0
Identities = 558/606 (92%), Gaps = 43/606 (7%)
Strand = Plus / Plus
Query: 1 tcctacaattaggagttatctaaactctgcttcaggtaaaataactcaattttttctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tcctacaattaggagttatctaaactctgcttcaggtaaaataactcaattttttctgaa 217
Query: 61 gtaaagtctgttctttgggggcaggagagagaagagggagctggcttagcaggtgagggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gtaaagtctgttctttgggggcaggagagagaagagggagctggcttagcaggtgagggg 277
Query: 121 ggcttgccaccaagcccaaatatgacttgaggtttgactcctgcaggtttgttctctaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggcttgccaccaagcccaaatatgacttgaggtttgactcctgcaggtttgttctctaat 337
Query: 181 ctcatcacctaaaactagaggagtaagtagaacc-------------------------- 214
||||||||||||||||||||||||||||||||||
Sbjct: 338 ctcatcacctaaaactagaggagtaagtagaaccctagatcttaaactccagacagagcc 397
Query: 215 -----------------acagagggtcagagagctgaagtctctgccgtccccactttct 257
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 atgaagggtagactgccacagagggtcagagagctgaagtctctgccgtccccactttct 457
Query: 258 gtttcttcctttgtccagactcctgccttggatttgtttgagctgcctaattcctttcct 317
| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 458 gaatcttcctttgtccagactcctgctttggatttgtttgcgctgcctaattcctttcct 517
Query: 318 agccctcaagccccaaataagagagagtagaatggaactgtttaaaccaatttattactt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agccctcaagccccaaataagagagagtagaatggaactgtttaaaccaatttattactt 577
Query: 378 tctaaacttttttttaaatatcttcttgttatatttacccctttcccactttttcaaagg 437
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tctaaactttttttttaatatcttcttgttatatttacccctttcccactttttcaaagg 637
Query: 438 tctctcttgtttaaggtttaaactggcagattttctctatgcatagtgttttagtctgaa 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tctctcttgtttaaggtttaaactggcagattttctctatgcatagtgttttagtctgaa 697
Query: 498 tattatatacttccgtctctctggcttgggatttggcatcctcctgcctcagcattttta 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tattatatacttccgtctctctggcttgggatttggcatcctcctgcctcagcattttta 757
Query: 558 gtactg 563
||||||
Sbjct: 758 gtactg 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_f19.g1 MSMg01no413_f19.g1 CHROMAT_FILE:
MSMg01no413_f19.g1 PHD_FILE: MSMg01no413_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:01 2005
(538 letters)
>mm_chr3_52272935_52273872
Length = 938
Score = 735 bits (380), Expect = 0.0
Identities = 392/398 (98%), Gaps = 4/398 (1%)
Strand = Plus / Minus
Query: 1 ctttaatgctttcgactctaacccccaaaatccacctatgtgtcacccactcgccaacgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctttaatgctttcgactctaacccccaaaatccacctatgtgtcacccactcgccaacgt 339
Query: 61 taagccaatcaaagggagcaagtgatgctgtgtggaccacgatgggagcctaagggagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 taagccaatcaaagggagcaagtgatgctgtgtggaccacgatgggagcctaagggagga 279
Query: 121 gagaagatcaaaggaggaagcaggggaatagggcaaaaatatcaattttccattttgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gagaagatcaaaggaggaagcaggggaatagggcaaaaatatcaattttccattttgttt 219
Query: 181 aaaaaaaataataagaaagagctagggatagagctcagttggtagagggtcgacctagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aaaaaaaataataagaaagagctagggatagagctcagttggtagagggtcgacctagca 159
Query: 241 ttcacaaagccctagcacagcacaaactgggcatacgggtacatatctataatgacagcc 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttcacaaagccctagcacggcacaaactgggcatacgggtacatatctataatgacagcc 99
Query: 301 ctcagggggtagatacagaaatccaaggtcatccttaggtaaatgtcaagtctgaggcca 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 98 ctcagggggtagatacagaaatccaaggtcatccttagctaaatgtcaagtctgaggcca 39
Query: 361 ccctgagctac----atgaggccctgtccctgtctcaa 394
||||||||||| |||||||||||||||||||||||
Sbjct: 38 ccctgagctacatgtatgaggccctgtccctgtctcaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
