Query= MSMg01no413_h17.b1 MSMg01no413_h17.b1 CHROMAT_FILE:
MSMg01no413_h17.b1 PHD_FILE: MSMg01no413_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:10 2005
(608 letters)
>mm_chr3_147647468_147648476
Length = 1009
Score = 1114 bits (576), Expect = 0.0
Identities = 594/602 (98%), Gaps = 5/602 (0%)
Strand = Plus / Minus
Query: 10 gaattcttgtcttc---ttgctcaaagcagagactcggatctttcccctcatcctgggtt 66
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 809 gaattcttgtcttcaaa--gctcaaagcatagactcggatctttcccctcatcctgggtt 752
Query: 67 ctctgcttctcttcaccgtgtagaatctgcattgtccagctgcagggagcttgggaagag 126
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ctctgcttctcttcactgtgtagaatctgcattgtccagctgcagggagcttgggaagag 692
Query: 127 aaacgctgcaggtctgctcactgtgctcagtgtctgaaaggagatccctggttatttgcc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaacgctgcaggtctgctcactgtgctcagtgtctgaaaggagatccctggttatttgcc 632
Query: 187 actggaatctcaatatttactctgttcttccatcgtcggcctgccttctgagctcctgtt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 actggaatctcaatatttactctgttcttccatcgtcggcctgccttctgagctcctgtt 572
Query: 247 tctctggcccttcatttctttctgcaagggattctcagaagtctagatgtcggggtaaga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tctctggcccttcatttctttctgcaagggattctcagaagtctagatgtcggggtaaga 512
Query: 307 acacatcaaacctttagcatgattcccgtctccaactttatacattaggcatgcccccga 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acacatcaaacctttagcatgattcccgtctccaactttatacattaggcatgcccccga 452
Query: 367 aaaaaagcgtcttacttaaacagtgtccgactaagaggaccacagtgatgatctaactcc 426
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 451 aaaaaagcgtcttacttaaacagtgtccgactaagaggaccacagtgctgatctaactcc 392
Query: 427 aggtaactgaatcgactccacctttaagtccggactacaaagtgtagtgtgaggccccag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aggtaactgaatcgactccacctttaagtccggactacaaagtgtagtgtgaggccccag 332
Query: 487 gcacctggtgactccaattgggatcctcacaggaatatagccgactacatatgctcattg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gcacctggtgactccaattgggatcctcacaggaatatagccgactacatatgctcattg 272
Query: 547 caatatttgcctcagggaaaagtggaggactccttctgtgctctgaactgccaactctca 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 caatatttgcctcagggaaaagtggaggactccttctgtgctctgaactgccaactctca 212
Query: 607 gg 608
||
Sbjct: 211 gg 210
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space: 597402
Effective search space used: 597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_h17.g1 MSMg01no413_h17.g1 CHROMAT_FILE:
MSMg01no413_h17.g1 PHD_FILE: MSMg01no413_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:10 2005
(554 letters)
>mm_chr3_147511236_147512189
Length = 954
Score = 1050 bits (543), Expect = 0.0
Identities = 552/555 (99%), Gaps = 1/555 (0%)
Strand = Plus / Plus
Query: 1 ctaacatgagctattcatgaaaaaaaa-agacataattgaagtgtttctatgcttggatg 59
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 ctaacatgagctattcatgaaaaaaaagagacataattgaagtgtttctatgcttggatg 259
Query: 60 ctataacgtatttttaataaaaataaaaacagtaatagaaaaagcagaaaagaaaggcaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctataacgtatttttaataaaaataaaaacagtaatagaaaaagcagaaaagaaaggcaa 319
Query: 120 gtatcccacagcagctgaacctatttaacagagactctgcatattccctatcccttgggt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtatcccacagcagctgaacctatttaacagagactctgcatattccctatcccttgggt 379
Query: 180 aaaagtatgtggttaaacctgggaggggggcggcatttcatgggcatatgtcacccttca 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 aaaagtatgtggttaaacctgggaggggggcagcatttcatgggcatatgtcacccttca 439
Query: 240 tattaccaccagcagaaacgactacagaaagcggcccattagtttttccttaatagactg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tattaccaccagcagaaacgactacagaaagcggcccattagtttttccttaatagactg 499
Query: 300 ttttgcttccctcccactgccacacccttgggatatgttgacactacttcagtgtagatt 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 500 ttttgcttccctcccactgccacacccttgggatttgttgacactacttcagtgtagatt 559
Query: 360 ttggtggatagtttcaataattagttgcataacccaaagctgacattttccctgtcactt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttggtggatagtttcaataattagttgcataacccaaagctgacattttccctgtcactt 619
Query: 420 tagtatatgccacatattataaaattttatttttaaggttactttttacaacatgagcga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagtatatgccacatattataaaattttatttttaaggttactttttacaacatgagcga 679
Query: 480 ttctaaaaggcagctttgtaaatataatatacttcatatttttctaagatgtgcctttgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttctaaaaggcagctttgtaaatataatatacttcatatttttctaagatgtgcctttgt 739
Query: 540 tacacaaattagcat 554
|||||||||||||||
Sbjct: 740 tacacaaattagcat 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
