Query= MSMg01no413_h20.b1 MSMg01no413_h20.b1 CHROMAT_FILE:
MSMg01no413_h20.b1 PHD_FILE: MSMg01no413_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:11 2005
(523 letters)
>mm_chr3_4582422_4583345
Length = 924
Score = 940 bits (486), Expect = 0.0
Identities = 512/524 (97%), Gaps = 7/524 (1%)
Strand = Plus / Plus
Query: 1 gctatcaaatacaaacagttcccaggcttgtggccaagcactatcctaattggtaatgac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gctatcaaatacaaacagttcccaggcttgtggccaaggactatcctaattggtaatgac 260
Query: 61 cacttgttcatggtcacctttgaagtggtgccagcattagcaggagttgtggtttccttg 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 261 cacttgttcatggtcacctttgaagtggtgccaacattagcaggagttgtggtttcctcg 320
Query: 121 gccttcacttgctggtactgaccagcagcgaaatgggaatcaatctctgtcaggactgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccttcacttgctggtactgaccagcagcgaaatgggaatcaatctctgtcaggactgta 380
Query: 181 attgagcacttccttaatttatgagacagttttcccattaacaacaaaatcttgagaatt 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgagcacttccctaatttatgagacagttttcccattaacaacaaaatcttgagaatt 440
Query: 241 aaataaaaacagaccttttt----agtgctgcagcttaggtgcatgtggcgtaaacgttg 296
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataaaaacagacctt---cacaagtgctgcagcttaggtgcatgtggcgtaaacgttg 497
Query: 297 ataaatgtacgtgccttgtggaagcctgactttgaaaaattctgtgtcagagttttaggt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ataaatgtacgtgccttgtggaagcctgactttgaaaaattctgtgtcagagttttaggt 557
Query: 357 cattttctgacaacaattaggaacattgaacggaatagctggcgattcttcttggatatg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cattttctgacaacaattaggaacattgaacggaatagctggcgattcttcttggatatg 617
Query: 417 acaggtgatgtaaagccatctttccagagaaaagtccttttatgagtatgaaatgcagga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acaggtgatgtaaagccatctttccagagaaaagtccttttatgagtatgaaatgcagga 677
Query: 477 tgcaggcacacccttgggactgagaatctgtaggtacttccact 520
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 678 tgcaggcatacccttgggactgagaatctgtaggtacttccact 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_h20.g1 MSMg01no413_h20.g1 CHROMAT_FILE:
MSMg01no413_h20.g1 PHD_FILE: MSMg01no413_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:11 2005
(570 letters)
>mm_chr3_4775662_4776631
Length = 970
Score = 1094 bits (566), Expect = 0.0
Identities = 569/570 (99%)
Strand = Plus / Minus
Query: 1 aaagattttcaggatagttctagttttaaggaatttctgcaacttatgcttgatcttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aaagattttcaggatagttctagttttaaggaatttctgcaacttatgcttgatcttttg 711
Query: 61 tttgctttattgggaatcacaagaaagaagtgcttttctgataaccaagggcaatgatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tttgctttattgggaatcacaagaaagaagtgcttttctgataaccaagggcaatgatgt 651
Query: 121 ttgttatatactcacacaatgtttctgaagcaggctacaaagggagaggcctataaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttgttatatactcacacaatgtttctgaagcaggctacaaagggagaggcctataaaatg 591
Query: 181 atgaacaattttagaagcaagtataaattcaagccatgtgattctcctattcatagaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atgaacaattttagaagcaagtataaattcaagccatgtgattctcctattcatagaaaa 531
Query: 241 tttgtatattcattactaaagaatccagtgcatttgaatcacagatttaaatgataaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tttgtatattcattactaaagaatccagtgcatttgaatcacagatttaaatgataaaat 471
Query: 301 gatacaacagaggcttatgagcatactggcaaattataattttatgaattgattgaaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gatacaacagaggcttatgagcatactggcaaattataattttatgaattgattgaaact 411
Query: 361 agttgtgctctgttgaaaagacttacaatgctaactgcaaacaacttattaaaaagatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agttgtgctctgttgaaaagacttacaatgctaactgcaaacaacttattaaaaagatct 351
Query: 421 agtttcttttcttcaaaatttcttaaagctaactaagtccagggaaagtaggtacaatga 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 350 agtttcttttcttcaaaatttcttaaagctaactaagtccagggaaagtaggtacagtga 291
Query: 481 gaacattaagtgtaactatggtgatggcagaaattcacagttttctgcttcaacagagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gaacattaagtgtaactatggtgatggcagaaattcacagttttctgcttcaacagagtg 231
Query: 541 tcatctacataaagcatagttatggacaca 570
||||||||||||||||||||||||||||||
Sbjct: 230 tcatctacataaagcatagttatggacaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
