Query= MSMg01no413_j09.b1 MSMg01no413_j09.b1 CHROMAT_FILE:
MSMg01no413_j09.b1 PHD_FILE: MSMg01no413_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:18 2005
(565 letters)
>mm_chr3_24427254_24428218
Length = 965
Score = 946 bits (489), Expect = 0.0
Identities = 557/611 (91%), Gaps = 52/611 (8%)
Strand = Plus / Plus
Query: 5 gaattccctctattatcccat--taatagcattgcaacggagaaaa-acatgaacatcct 61
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 157 gaattccctctatta--ccatattaatagcattgcaacggagaaaatacatgaacatcct 214
Query: 62 gagtgtccattgtgtcctcaatggatgaatacaagatgaatttctacattttatgtcata 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gagtgtccattgtgtcctcaatggatgaatacaagatgaatttctacattttatgtcata 274
Query: 122 catataaacatataacaaaatactgtttaacaaaaaatgtactctgactatttacagcaa 181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 275 catataaacatataacaaaatactctttaacaaaaaatgtactctgactatttacagcaa 334
Query: 182 tgtagactaaactggggagacattatgctacttaaagtaagccagacctggaaagacaac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtagactaaactggggagacattatgctacttaaagtaagccagacctggaaagacaac 394
Query: 242 cctgcatgatatgatctcacaggtgaaaaaaaa----gtttt------------------ 279
||||||||||||||||||||||||||||||||| ||| |
Sbjct: 395 cctgcatgatatgatctcacaggtgaaaaaaaaagcagttatatatatatatatatatat 454
Query: 280 -------------------------tatatatatatcattattttctatagtcaccttga 314
|||||||||||||||||||||||||||||||||||
Sbjct: 455 atatatatatatatatatatatatatatatatatatcattattttctatagtcaccttga 514
Query: 315 tagcacataccatactccatactggagcttcatagatgtctgctatggttggcgatttta 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tagcacataccatactccatactggagcttcatagatgtctgctatggttggcgatttta 574
Query: 375 tataccattataagaatattaggagatagaatctctaagaggtaattctatacagttctt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tataccattataagaatattaggagatagaatctctaagaggtaattctatacagttctt 634
Query: 435 ttcaggaatgaattgatgttgatactgagagtgtgtataaattagaggaatgggtctgtt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttcaggaatgaattgatgttgatactgagagtgtgtataaattagaggaatgggtctgtt 694
Query: 495 gtgttatgaaaggctatggtttgtgttctctgtctctctttctctccctgcctatctctg 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtgttatgaaaggctatggtttgtgttctctgtctctctttctctccctgcctatctctg 754
Query: 555 tctgtgttctg 565
|||||||||||
Sbjct: 755 tctgtgttctg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_j09.g1 MSMg01no413_j09.g1 CHROMAT_FILE:
MSMg01no413_j09.g1 PHD_FILE: MSMg01no413_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:19 2005
(236 letters)
>mm_chr3_24626774_24627409
Length = 636
Score = 375 bits (194), Expect = e-108
Identities = 224/234 (95%)
Strand = Plus / Minus
Query: 1 ctcaaaactagctgagacatctcagctttatgttgtaaaggaacgacttttcatcactac 60
|||||| |||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct: 434 ctcaaacctagctgagacatctcagctttatgttgtaaaagaatgacttttcatcattac 375
Query: 61 tgttggaaatattgataaatgagaggaactttattttcattatctttatttctgtgctgg 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 374 tgttggaaatattgataaatgagaggaagtttattttcattatctttatttctgtgctgg 315
Query: 121 tctaacaaccacctcaatttctaaaaattataaaattgtgtttaaagaattatgattgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 314 tctaacaaccacctcaatttctaaaaattataaaattgtgtttaaagaattatgattaaa 255
Query: 181 ttatgaagttgcttgatatgatcttttaaaatattgcatattaacatgttcagg 234
||| ||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 254 ttacaaagttgcttgagatgatctttttaaatattgcatattaacatgttcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
