Query= MSMg01no413_j17.b1 MSMg01no413_j17.b1 CHROMAT_FILE:
MSMg01no413_j17.b1 PHD_FILE: MSMg01no413_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:20 2005
(560 letters)
>mm_chr3_136487154_136488112
Length = 959
Score = 1036 bits (536), Expect = 0.0
Identities = 554/560 (98%), Gaps = 1/560 (0%)
Strand = Plus / Minus
Query: 1 gagtctattttccctgaaatccctcctacccaaaaaggagttttgaagaaggaagaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gagtctattttccctgaaatccctcctacccaaaaaggagttttgaagaaggaagaacat 700
Query: 61 agaaagtgggaagggaaacaatatcgtgttttatgtcttattgcctaggacatgcatgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agaaagtgggaagggaaacaatatcgtgttttatgtcttattgcctaggacatgcatgca 640
Query: 121 agtagacttccctggcatgttgtctttctcttgtatcaattacttctggaaatacatcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 agtagacttccctggcatgttgtctttctcttgtatcaattacttctggaaatacatcct 580
Query: 181 tcaatattagtttaaatttcaaaagcatcactaccatgtatggaacttattataagaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tcaatattagtttaaatttcaaaagcatcactaccatgtatggaacttattataagaaca 520
Query: 241 taagcaatcacttattgttatggggcaaaagaatttccctctcagaattcaacactaaca 300
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taagcaatcacttaacg-gatggggcaaaagaatttccctctcagaattcaacactaaca 461
Query: 301 acaatgtgaacacagttcttaggtgctttaaatagtgaatattttctcaagagttcgata 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 460 acaacgtgaacacagttcttaggtgctttaaatagtgaatattttctcaagagttcgtta 401
Query: 361 agacatttgaaacctgtctatactgtctctaggacaaaataatgatagcattaccttcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agacatttgaaacctgtctatactgtctctaggacaaaataatgatagcattaccttcca 341
Query: 421 ctgtgatgttaacaagagctagaacattggaaaaccctgaggcaactttaaacacagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgtgatgttaacaagagctagaacattggaaaaccctgaggcaactttaaacacagaaa 281
Query: 481 taaatagcacacagccagtctcttagcctttcttgccctctctttcaaattctacttgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 taaatagcacacagccagtctcttagcctttcttgccctctctttcaaattctacttgca 221
Query: 541 actgaacattctgacctcaa 560
||||||||||||||||||||
Sbjct: 220 actgaacattctgacctcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_j17.g1 MSMg01no413_j17.g1 CHROMAT_FILE:
MSMg01no413_j17.g1 PHD_FILE: MSMg01no413_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:20 2005
(512 letters)
>mm_chr3_136363689_136364600
Length = 912
Score = 920 bits (476), Expect = 0.0
Identities = 503/512 (98%)
Strand = Plus / Plus
Query: 1 tgggatagagccaggcacaggaagatgtaaggagacaaatgcatggtacctgagcacagg 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggatagagccaggcacctgaagatgtaaggagacaaatgcatggtacctgagcacagg 260
Query: 61 tagtcagccatgtggcaggatgtagattagaataaatgggttattttaagttgtaatcta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 261 tagtcagccatgtggcaggatgtagattagaataaatgggttattttaagttgtgatata 320
Query: 121 gtcagagaagaacctagctatctggccaatgtactggtaaatctatcttgagtctgagtc 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gtcagagaagaacctagctatctggccaaggtactggtaaatctatcttgagtctgagtc 380
Query: 181 ttatttctgggagcatggggctgggaggagagccagatgtaccttctacactttgtcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatttctgggagcatggggctgggaggagagccagatgtaccttctacactttgtcatc 440
Query: 241 aaaggcttctcttgaccacaaacagctgtgtatttttggactccattttgggtgatgctt 300
||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggcttctcaggaccgcaaccagctgtgtatttttggactccattttgggtgatgctt 500
Query: 301 gtgtattccttggatctcttatggtcacatggttcccatgccaaagatgctgcatctcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtattccttggatctcttatggtcacatggttcccatgccaaagatgctgcatctcct 560
Query: 361 gtatccaggttcaggcatctgtggtgcatccgcagggctgggatggcttaagatctctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtatccaggttcaggcatctgtggtgcatccgcagggctgggatggcttaagatctctca 620
Query: 421 tttcctgccgcgactcttgtctaacccatcatcctatgatgaccatttgtctcctatagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcctgccgcgactcttgtctaacccatcatcctatgatgaccatttgtctcctatagc 680
Query: 481 cctgaagtcaggtagtttctttttaaaattag 512
||||||||||||||||||||||||||||||||
Sbjct: 681 cctgaagtcaggtagtttctttttaaaattag 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
