XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGAAGCT
ATCCTGTCATGGTAGAATTCAAACATGACCAGAAGGGTTTCCTCACATCT
TCCCCCTGTGACAGATTGGATACCATTCTTCCCCCAATACTCAGAAAAAA
AAAAATCATGAAAATTTGAAGTTTTGGGTGTCCTGTGTTATTCCAGGCTA
TGTCAGTTGCAAGGTTCTACCCACTACTTTTGTAGTTTTAGGCTCGGTGG
CTTTGCAGTTTAGCTAGCAGACAGGTAAGAGTTTCAGGCAATTAGTTTGC
TCAGAGGATTTACTTTTGGCTGGGGCAGGGGGTGTCCTTCCTTTTGAGAT
GGCCTTTATCCTTGGCCTGGGGGAGAGGCCCAATCTGACATCTGCTCCAG
GTCCATACCAGCAAAGCAAGTCCCTCTTTCCTGCTTGTGCATGCACCCTG
CCCAAGGGATGAGGGTTGGGGTGGGGTTGNNCTTGNGAGCTNAANNGNNN
NGNNNTTNTGTTTTTTTTNTTTTTCGCGTTTAGGCGTTTGCTTTGGNTTT
TTTGTTTTTGCCTTTTTTTTCCCCCCCCTTTTTTTTTTTTTTTTCCGCCT
TTTTTCTCCCTCCCCTTTCTTTCCTTCCTCTTTTTTTTCCTTTCTTTCCC
CTTTTTTCTCCTTATCCCTTCTTCCTCTTTTTTCCTTTCCTTTCTCCCCC
ATATTGCACTCCTTTTTTTACTTTTCTATCCCTCATTCACGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAAGGCCCATACTTAACCATAATAAAAGCAATATACAGCAA
ACCAACAATCAGTAATGAATTAAATGGAGACATACTTGACGTAATCCCAC
TAAAATTGGGGACAATATAAGAAGTACTCTTCAATATAGTACTCAAAGTG
CTAGCTAGACAATAAGACAACCAAAAGAGATCAAGAGGATACAAACTGGC
AAAGAAGAAATAAAGGTATCAATATTTTCAGGTGATATGATAGTATACAT
AAGCAGTCCCAAAAATTCTACCAGATAAGTTCTCTGACTGATGAACAACT
TCAGCAAAGTGGCTGAATATAAAATTAACTCAAATAAATCAGTAGCCTTC
CTTTATACAAATGATAAACAGGGTGAGAAAGAAATTAGGGAAACAACTCC
CTTCACAATAGCCACAAATAATATAAAATATCTTGAGGGTAACTCTAACC
AAACTAGTGAAAGGCCTATATGATAATAACTTCNAGTCTCTCAAGGAAGA
AATCAAAGAAGATCTCAGAAAATGGAGAGAACTCCCGTGCTCATGGATTG
GCAGGATCAATATAGTAAAAAATGGCCATCCTACCCAAGGGAATCTATAG
ACTCCATGCAATTCCCTCCAAATCCCCTCACATTCTTCCAAGAATTTGAA
GAGAATTTCTCAATTTTTCTGGAAGGGGGAAAGCCCCAAAACTTAAAAAA
ATTTCCCCCCAAAAAAAAGGG

Query= MSMg01no413_m20.b1 MSMg01no413_m20.b1 CHROMAT_FILE:
MSMg01no413_m20.b1 PHD_FILE: MSMg01no413_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:36 2005
         (449 letters)



>mm_chr3_7173313_7174160
          Length = 848

 Score =  828 bits (428), Expect = 0.0
 Identities = 440/444 (99%), Gaps = 1/444 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagagaagctatcctgtcatggtagaattcaaacatgaccagaagggtttcctca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattcagagaagctatcctgtcatggtagaattcaaacatgaccagaagggtttcctca 650

                                                                       
Query: 65  catcttccccctgtgacagattggataccattcttcccccaatactcagaaaaaaaaaaa 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 649 catcttccccctgtgacagattggataccattcttcctccaatactcag-aaaaaaaaaa 591

                                                                       
Query: 125 tcatgaaaatttgaagttttgggtgtcctgtgttattccaggctatgtcagttgcaaggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcatgaaaatttgaagttttgggtgtcctgtgttattccaggctatgtcagttgcaaggt 531

                                                                       
Query: 185 tctacccactacttttgtagttttaggctcggtggctttgcagtttagctagcagacagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tctacccactacttttgtagttttaggctcggtggctttgcagtttagctagcagacagg 471

                                                                       
Query: 245 taagagtttcaggcaattagtttgctcagaggatttacttttggctggggcagggggtgt 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 470 taagagtttcaggcaattagtttgctcaaaggatttacttttggctggggcagggggtgt 411

                                                                       
Query: 305 ccttccttttgagatggcctttatccttggcctgggggagaggcccaatctgacatctgc 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 410 ccttccttttgagatggcctttatccttggtctgggggagaggcccaatctgacatctgc 351

                                                                       
Query: 365 tccaggtccataccagcaaagcaagtccctctttcctgcttgtgcatgcaccctgcccaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tccaggtccataccagcaaagcaagtccctctttcctgcttgtgcatgcaccctgcccaa 291

                                   
Query: 425 gggatgagggttggggtggggttg 448
           ||||||||||||||||||||||||
Sbjct: 290 gggatgagggttggggtggggttg 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 848
Length adjustment: 10
Effective length of query: 439
Effective length of database: 838
Effective search space:   367882
Effective search space used:   367882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)