BAC Information

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BAC

Clone NameMSMg01-414E09
Chromosome3 (Build37)
Map Location 25,971,628 - 25,971,835
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414E09.T7 (MSMg01no414_e09.b1)MSMg01-414E09.TJ (MSMg01no414_e09.g1)
ACCAG510609AG510610
length767780
length of high quality
(start - end)
209 (333 - 541)474 (74 - 547)
definitionCHROMAT_FILE: MSMg01no414_e09.b1 PHD_FILE: MSMg01no414_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:15 2005CHROMAT_FILE: MSMg01no414_e09.g1 PHD_FILE: MSMg01no414_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTCCAATTTTCTAAACTGGGTTGAGAACCAAAGAAATCATAGAC
CCTATTGGGGAAACATCATTTGTCTTTAAATAGGTGTGGTTAAACTATCT
TTTAAGGATGTATTTTTCAGGATCCTTCCCTCACTAGTCCCTTAGATTCA
CCTGAATGTTACAGCAAGTTTTAGCATTTTATCTTCCTTTTCCCAAGAAT
ATTTGGTATAGAATTTTTTTAAGTGCAGATCCTTGGAGAATTATTATGAA
TGCTATAGAACATTATATGTAAGGTATTTATAGCAGTCTCTTTGCTATGT
TCCAGGCTATTTAATCACACTGTGAACCCTGGGACTAAATCTCTGTCTCA
TGTTAGAGTCCAACCTGCAAGAAATTTGAGCTCAATGACTTTAAGCCCCA
TCATTTAAGTTTTCACAATTTTAAATTCACAATTTCAGTAAAGTGAATAT
TCTAAAATACGTTTGCTTGTTAAAATAAAACTCATGGTTAGGTGGTTCTT
ACATATGATACACACATTATGTTGTCAGTCTCCCTTCCTTAAAAACTGTT
TTATTCACTANAAAGGATTGTGAGATTACATTCTTCAAAATACCTAAACA
TGCTTTTAAAATACAATATTTATTTTGTATTTATCAAATCATATGTGATC
ATAATCTAGGTTCTAATACAATACTGCTCAGCATAGGAGCATGGGTGGCA
CCATACATTCGAATCCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATTACAGACATGAATGACAACCTAC
ATTATATAATAGTAGAAAGAAGGTGGGCTGTGGTTTAAGGAGGAACTAGA
GTATTGCATTATTCATAAAAAGATTAGCAGAATGGAACTTCCCTGGGACA
TGTTTTTCTCTAGGCCCAGAGGAATAGTATAATTAGGTATTTACTAAGAA
AGCCCTGGTAGTGGGTTTAACAATAAACTAGTATTGCAACTGGGCATATT
AGCCCTTTCACCTGGCTCCTGTTTTTAGCTGACTTTACATAGGGCTGATC
TTATCTCAGTTGTAAACATTGCCTGGTTCTTGTCAGCTTTTATGTATGCA
TTTTCTCTGTTTTGTGTAAAGAGCCATTATGCATCTCGATATACATTGGC
TGATATATCACATAACTTTCTTGTTTTTCTTCTGTATTATAAGTGTGATG
CTTGGTTTGAGAAATTACACTCCGATTCAGCACTCTCTCTGGAGATTGTG
TCTGTTTGCCACTCTGCCAACTCCTTGTCCATCTGAGTACCATGACCCTG
ATTCCCCCCCAGGTTGAGGGACTAAACTGATTTCCTTCTGTGGTTAGGCA
AACCCCATAAACTTTATTCTTATGCTCCGGCCACAGGTTTATTATTCTTA
CTTATCCTTCTCCTGTACATCTCTTTGCCCCCCTTGCAGGCCCTATTGTT
TTTCCTCTAATCATTAATTCCACTATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_e09.b1 MSMg01no414_e09.b1 CHROMAT_FILE:
MSMg01no414_e09.b1 PHD_FILE: MSMg01no414_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:15 2005
         (209 letters)



>mm_chr3_25971370_25971978
          Length = 609

 Score =  381 bits (197), Expect = e-110
 Identities = 206/209 (98%), Gaps = 1/209 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagtctctttgctatgttccaggctatttaatcacactgtgaaccctgggactaaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct: 466 gcagtctctttgctatgttccaggctatttaatcacactgtgaaccc-ggggctaaaact 408

                                                                       
Query: 61  ctgtctcatgttagagtccaacctgcaagaaatttgagctcaatgactttaagccccatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctgtctcatgttagagtccaacctgcaagaaatttgagctcaatgactttaagccccatc 348

                                                                       
Query: 121 atttaagttttcacaattttaaattcacaatttcagtaaagtgaatattctaaaatacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atttaagttttcacaattttaaattcacaatttcagtaaagtgaatattctaaaatacgt 288

                                        
Query: 181 ttgcttgttaaaataaaactcatggttag 209
           |||||||||||||||||||||||||||||
Sbjct: 287 ttgcttgttaaaataaaactcatggttag 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)