BAC Information

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BAC

Clone NameMSMg01-414E11
Chromosome3 (Build37)
Map Location 138,332,009 - 138,332,257
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1
Downstream geneTspan5, LOC620771, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414E11.T7 (MSMg01no414_e11.b1)MSMg01-414E11.TJ (MSMg01no414_e11.g1)
ACCAG510613AG510614
length801746
length of high quality
(start - end)
249 (69 - 317)177 (81 - 257)
definitionCHROMAT_FILE: MSMg01no414_e11.b1 PHD_FILE: MSMg01no414_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:16 2005CHROMAT_FILE: MSMg01no414_e11.g1 PHD_FILE: MSMg01no414_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAATTTGCGGCGCTAAACGACTCCTATATTCAGGACTCCGCGGAATTC
CTACAGGGTGTCTGACATAAAGGACCAGAACTCTGCCTTTCAGAACAGGA
AACCCCTAACCAACTCCTTGTGGGCACTCGGGAGCTCTTCTGGAAGGTAA
CCACCCAAGGTGAGGGCTTCAGCCCACAGGAGGGCGGCTTCTTCTAAGCA
AAGGAAAGGGTTTTCACTGGTGGGCAGGTGTGATTCTCCGGGTATGTGAT
ATTTATCATTCTGGGAGCTATCATGACTATAAGCTATAAGCTATCATGAC
TGGACCCGGGAGTCTGGGATGGTTTGAGCCGGAAGACTTCAAATGAGGNC
CTTAGATCAGACCTGCATCTCACAGAAACCTCCCAGGAGGCCAGATGGAG
CCTGAAGGGTGCAGCGTGCGGCGCGCGGAAGGCCTGGCATTGCAAGCTGC
TGCTTCGATGCAGGTGTTCTGAGCGGCGTATTTTGAGTTGACCTAAGGGT
GATTAAAATTTCCGCTTTCCCCAATTATCATGCAATTATGCAAAACCAGT
GACTCACTTCTATTCCATATTTCCGTCCTTTCACCATCCCCTGGACCCCG
TAAACTATTTCAATGACAGCGTTTGGTTCCTTAGATGCTTTCATATAAAT
GCCGTCAAACCTCTATTCCTTTTTTTTTTTTTTCCACTGTCTTTCCACCT
TTAGCATCGTTTAATTATATAAGTTAAACCCTCCATCATATCATATTGAC
CTACCAGAATCCGTTGATACCGTTGGACACCCTTTAGTTTACTTTCTTCA
A
TTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCAATCAAGAATTGAGGG
GGGTTAGCGGGGTAGTGGTAGCGCATGCCAAACTTTAAACCTAGCACTCA
GATCTAGAGGCAGGCAGATCTCTCTGAGTTGGAGGCCAGCCTGGTCTACA
GAGTAAGTTCTTGGATAGCCAGGGTTACCCATAGAAACCCTGTCTCAGAA
AACAAACCTTTTGAGAAAAGAAAAGAAATGCGAGAATTAAAAGGCTCTAG
AGTTTATCAGATACAACCCGGTAGTCTAATTCTTTCAAACACATAATCAG
TACACAACAACTGCCGTTTTCTATTTTTTTGTTTGTTTGTTTGTTGCTAG
AGGAATGCTGTGACTTTTTAAAAAATCTTTTCCACCTTAACACACCAGAA
AAGCCCATGTTTTCTTGAATAACTTTTCCTGTATAACCAACCACTTGTAT
CTTTTAATCAAAATGTATACATTTAAGAAAATTAGTGACTGCATATGCGC
ACTATGTTGTATATGACCTCTAACTGTATAATTTCCCGCTTCCTTATTTG
AGGCTCTCCACCTCTAAATATGGGTTTATCATATCTTTTGGCCTTCCTTA
TCCGGTTTTCGACCTTTTTTTTTCTTTTTTTCCTCTCTTAACTACTATAT
CCCTTTCCTTTTGCGTTTTTGGTTTTCTTTTTTGTTCCGATTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_e11.b1 MSMg01no414_e11.b1 CHROMAT_FILE:
MSMg01no414_e11.b1 PHD_FILE: MSMg01no414_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:16 2005
         (249 letters)



>mm_chr3_138331809_138332457
          Length = 649

 Score =  427 bits (221), Expect = e-124
 Identities = 242/249 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggaccagaactctgcctttcagaacaggaaacccctaaccaactccttgtgggcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaaggaccagaactctgcctttcagaacaggaaacccctaaccaactccttgtgggcact 390

                                                                       
Query: 61  cgggagctcttctggaaggtaaccacccaaggtgagggcttcagcccacaggagggcggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cgggagctcttctggaaggtaaccacccaaggtgagggcttcagcccacaggagggcggc 330

                                                                       
Query: 121 ttcttctaagcaaaggaaagggttttcactggtgggcaggtgtgattctccgggtatgtg 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 329 ttcttctaagcaaaggaaagggttttcactggtgggcaggcgtgattctccggctatgtg 270

                                                                       
Query: 181 atatttatcattctgggagctatcatgactataagctataagctatcatgactggacccg 240
           | |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 269 agagctatcattctgggagctatcatgactataagctatatgctatcatgactggacctg 210

                    
Query: 241 ggagtctgg 249
           |||||||||
Sbjct: 209 ggagtctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)