ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGTTTATTTCTATACACCGTTTGTTTATTTATTTATTTATTTATT
TATTTATTTATTTATTTATTTATTTATGGTGCTTAGCTTCTTGAGTTTTT
TTTTATATATTTTGAATATTAGCCCTCTATTGGATATGGGCTTAGTGAAG
ATTTTTTTTTATCTTAATGTGTAGGTTGCTGGTGTGTCTTTTTGGCTCTT
TTTTGCTTTCTAGTTTCGTGAGATCCAATTTATCCATTCTTGCTCTTAGA
GCATGATCCTTTGGAGTTCTTTATTAGAAATTTCCCTTGTATCAAGGAAT
TCAAGGCTACTTACCATTTTCTGTTCTTATTAGATTCAGTGTATCTGGTT
TTACGTTCAGGTCCTTGATCCACTTGGACTTGAGCTTTGTGCATGGTGAC
AAATATGGATCTATTTTTACTTTTCTATGTACAGAGTGCCAGTTATACCA
TATCATTTGTTGAAAACGCTTTTTTTTCCTTCGTATATATTTGGTTTCTT
GGTCAAAGATCATGTGACCATAAGTGTGTGGTTTAATTTTTGGTCTTCAT
TTCTATTCCATTGATCAATGTGACTGTCTCTGTATCAATACAATGCAGNT
TTTATTGTTACTGCTCTGTTACCAAGCTTGAGGTCAGGGATGGTTATTCC
TTCAGCCTTTTTTTTAATTTTTTAACTCCCATTTTTTCGGGACTGGTAAG
AACTGTTTTTTCTACCTCGGGCT

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAGTTTGAATCAGGCAGGGGTATAT
TTACCCAGACACAAGGGAAGACAGTCTCATGAAATTGATGACCAAGTAAC
CAGCCACATAGAATGACTAAGTATAGAATAAGTGGAATGGTTTATTTATG
AGCTAATCATGGGATAGGCTCAAGTTTAGTACCTAAGCATTTATTCATAA
ACATAAATAAGTCTCAGAATCCTTTATTCAGGGTTCTTACATGTAGGTGG
GAAAACTTGCAGCTAGAAATGGCGCTCAACATGGGACAGAAAATCCAAGC
TTATAGCCTGAGAAGTCAGTGAGATGTGCCATTTAGCATTCTTCTTTATG
GTAGTGAGCAGAATGCTGTGTGAGATAAGCACCTAAAGTCTTTCTGGCAA
CATTAACCAACAAATGTTGGGAGGAAAAATACATAACATTGGTCAAAAGT
AGCTCCTTTTAGACCCCCTGTTGTACCACAAGGCTGCATTTGGCTGTCAG
ATATTTGAAGGGGTTATGGAAAGAACTGGCTTAGAAGGCAAAAAACAAAG
CTGTGCAGTATACTCTCAAGCAAGTGTANGTACACAGACAGGCAGTTTGG
AAGAGGCTTGGCACTTTGAGACATGGCCTGTANACAGAGGACAAATGTGG
GTGACAAAAACAAGCTTTGGACGGAGAAAACCTATTGCCCGTTAAATATG
GTTGAAACTATGCCCCCGTACTAAAGAAAAAAGA

Query= MSMg01no414_f14.g1 MSMg01no414_f14.g1 CHROMAT_FILE:
MSMg01no414_f14.g1 PHD_FILE: MSMg01no414_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:22 2005
         (543 letters)



>mm_chr3_43408937_43409880
          Length = 944

 Score =  913 bits (472), Expect = 0.0
 Identities = 526/544 (96%), Gaps = 1/544 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagtttgaatcaggcaggggtatatttacccagacacaagggaagacagtctcatgaaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tgagtttgagtcaggcaggggtatatttacccagacacaagggaagacagtctcatgaaa 821

                                                                       
Query: 61  ttgatgaccaagtaaccagccacatagaatgactaagtatagaataagtggaatggttta 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||
Sbjct: 820 ttgatgaccaagtaaccagccacattgaatgactaagtatagaataagtagaataattta 761

                                                                       
Query: 121 tttatgagctaatcatgggataggctcaagtttagtacctaagcatttattcataaacat 180
           ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 760 tttatgagctagtcaggggataggctcaagtttaggacctaagcatttattcataaacat 701

                                                                       
Query: 181 aaataagtctcagaatcctttattcagggttcttacatgtaggtgggaaaacttgcagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aaataagtctcagaatcctttattcagggttcttacatgtaggtgggaaaacttgcagct 641

                                                                       
Query: 241 agaaatggcgctcaacatgggacagaaaatccaagcttatagcctgagaagtcagtgaga 300
           |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 640 agaaatggcgctcaacatgggagagaaaatccaagcttgtagcctgagaagtcagtgaga 581

                                                                       
Query: 301 tgtgccatttagcattcttctttatggtagtgagcagaatgctgtgtgagataagcacct 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 580 tgtgccatttagcattcttctttatggcagtgagcagaatgctgtgtgagataagcacct 521

                                                                       
Query: 361 aaagtctttctggcaacattaaccaacaaatgttgggaggaaaaatacataacattggtc 420
           |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 520 aaagcctttctggcaacattaaccaacaaatgttgggaggaaaaatacataaaattggcc 461

                                                                       
Query: 421 aaaagtagctccttttagaccccctgttgtaccacaaggct-gcatttggctgtcagata 479
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 460 aaaagtagctcgttttagaccccctgttgtaccacaaggctggcatttggctgtcagata 401

                                                                       
Query: 480 tttgaaggggttatggaaagaactggcttagaaggcaaaaaacaaagctgtgcagtatac 539
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 400 tttgaaggggtcatggaaagaactggcttagaaggcaaataacaaagctgtgcagtatac 341

               
Query: 540 tctc 543
           ||||
Sbjct: 340 tctc 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space:   497822
Effective search space used:   497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)