BAC Information

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BAC

Clone NameMSMg01-414K13
Chromosome3 (Build37)
Map Location 81,922,610 - 81,922,769
singlet/doubletsinglet
Overlap geneGucy1a3
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414K13.T7 (MSMg01no414_k13.b1)MSMg01-414K13.TJ (MSMg01no414_k13.g1)
ACCAG510902AG510903
length860765
length of high quality
(start - end)
166 (49 - 214)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no414_k13.b1 PHD_FILE: MSMg01no414_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:46 2005CHROMAT_FILE: MSMg01no414_k13.g1 PHD_FILE: MSMg01no414_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGATGTGTTACTTTTGAAGATTGCACACAATTTAGAATACT
GTTATTTAAAAATGCAGTTTTCATATGTTTCAAGGACATTCTGTTTACCG
TGCTCTTAAAAGTGAGAAACTTCATTTCTAAATATTTTCTTTTGAAACCC
CTAGCATTTCCCAATTTTGAAATACACTATCATTGCTAAAGGGAGAGCAC
TGACTTCTTGAGNNAAGAGTGGAAAACCCTTCCGTATANNNNAAAGNNNT
TNTCTTTGTGTTTTTTGTGGGGGGTGGTGGTGTCGGGGTGGGGGGGTGGC
CCAATATACTACTGGGNNGGAATTNNAAGATCNGCCTCCTGGGGGGGGGG
GGGGGGCGGGAGGGGGGTTCTCCCACCAAATCACCGGNCGCGGGGGGGGG
GAGAGAGGGGGGGGGCCCCCCCCCCCTTTTTNNNAATTATCTCAAAATGG
CGGGTGTTTCTTTAGGGGGGGAAAAACCCCTCTTTTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNCNN
NCNCNCNNCCCCACACCANNNNCACCNNCACCNANCAAAANCCAAACACC
AACNCCCCANAACAACCCAAACCTTTCTTTTTTTTTTTTCTTCCTTCCTC
CTTTCCTTTTTTTTCTCTTTAACATTTCTATNCTCCTATCTTCTCTTTCA
CCTTACAATTCCTTTTCCCCCCCCTTNNNTTTATTTTTTTTTCTCCCTTC
TNTTTTTCNCTTTTTCTTATACATTTGATATTATCAGGGGGGTGGGGTGT
GTAGAGGGGC
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCA
TGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGTATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGA
ATTTTATTGAGGATTTTTGCATCGATATTCTTAAGAGAAATTGGTCTGAA
GTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAG
TGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGA
AATAGTTTGTGCAGAATTGGAATTATATCTTCTTTGAAGGTCTGGTAGAA
CTCTGCACTATACCCATCTGGTCTTGGGCTTTTTTTGCTTGGTAGATTAT
TAATATCTGCTCCCATTTCCTCCATTGTTATGACACTGCTCACATGTCCC
CCTTTCACTCGATTCTTTTTAGGCAACTGTATTTTTCTACTTAATCGGCC
TTCTCCTCTATTTTTTTTTTTTTTTTTCTCCCACGCCGCTTTACTTTGCT
CTCTCCTTATTTCCTCTTCATCTATCATCACCTCTTTTATTCTCTTCTCT
TTTTTATCTCATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_k13.b1 MSMg01no414_k13.b1 CHROMAT_FILE:
MSMg01no414_k13.b1 PHD_FILE: MSMg01no414_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:46 2005
         (166 letters)



>mm_chr3_81922407_81922972
          Length = 566

 Score =  294 bits (152), Expect = 2e-84
 Identities = 158/160 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagatgtgttacttttgaagattgcacacaatttagaatactgttatttaaaa 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagatgtgaaacttttgaagattgcacacaatttagaatactgttatttaaaa 263

                                                                       
Query: 64  atgcagttttcatatgtttcaaggacattctgtttaccgtgctcttaaaagtgagaaact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgcagttttcatatgtttcaaggacattctgtttaccgtgctcttaaaagtgagaaact 323

                                                   
Query: 124 tcatttctaaatattttcttttgaaacccctagcatttcc 163
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcatttctaaatattttcttttgaaacccctagcatttcc 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)