Query= MSMg01no414_l19.b1 MSMg01no414_l19.b1 CHROMAT_FILE:
MSMg01no414_l19.b1 PHD_FILE: MSMg01no414_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:53 2005
(494 letters)
>mm_chr3_100654285_100655178
Length = 894
Score = 859 bits (444), Expect = 0.0
Identities = 488/516 (94%), Gaps = 22/516 (4%)
Strand = Plus / Plus
Query: 1 gccaccttgagcccggtgtgaaattccctaactcgactagatttcgattttgatggaagt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gccaccttgaccccggtgtgaaattccctaactcgactagatttcgattttgatggaagt 239
Query: 61 ctgagaaaacgtctgccaggagtctgtgacttgcatgagctacttggagggttgcctgga 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 240 ctgagaaaacgtctgccaggagtctatgacttgcatgagctacttggagggttgcctgga 299
Query: 121 taggaaaaggctcagcaggcccagtcatcctggcctcttttcttctgaagccctg----- 175
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 300 taggaaaaggctcagcagccccagtcatcctggcctcttttcttctgaagccctgggctg 359
Query: 176 ----------------aacgttcctgagaggctcaggcccagggtctgccagaactgatg 219
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tctgctacagacactgaacgttcctgagaggctcaggcccagggtctgccagaactgatg 419
Query: 220 tattttattaaaagatgagagtatctttttgtccttgtttcaaataagatatagctaaag 279
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 420 tattttattaaaagatgagagtatctttttgtccttgtttcaaataagatatacctaaag 479
Query: 280 agtggatgagactaagaaatgtgaaactacagagctgattaattgctattctatctctgg 339
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 480 agtggatgagactaagaaatgtaaaactacagagctgattaattgctattctatctctgg 539
Query: 340 gttggtgagaggcaaagcttataggtttctagactaagggaagtttggagaagccatgtt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gttggtgagaggcaaagcttataggtttctagactaagggaagtttggagaagccatgtt 599
Query: 400 ttcagtcctatttagttctcaggccccagtggaatctgcttcttagtatctctggataac 459
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 600 ttcagtcctatttagttctcaggccccggtggaatctgcttcttagtatctctggataac 659
Query: 460 tcttccttcctcccccttcccctcccc-tccccctc 494
||||||||||||||||||||||||||| ||||||||
Sbjct: 660 tcttccttcctcccccttcccctccccctccccctc 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_l19.g1 MSMg01no414_l19.g1 CHROMAT_FILE:
MSMg01no414_l19.g1 PHD_FILE: MSMg01no414_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:53 2005
(251 letters)
>mm_chr3_100914315_100914965
Length = 651
Score = 485 bits (251), Expect = e-142
Identities = 251/251 (100%)
Strand = Plus / Minus
Query: 1 actgcctttgaagctctttcattcctatctgtgtaattatttttagcaagggctaagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 actgcctttgaagctctttcattcctatctgtgtaattatttttagcaagggctaagcag 392
Query: 61 gtggctggtggcatgcttagctggagaccagagggtgtacgtgtgggttgctggctgcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtggctggtggcatgcttagctggagaccagagggtgtacgtgtgggttgctggctgcga 332
Query: 121 gacactcgtggggattccaccgcgaaggaatgccgggcgtcccgggatagggcccaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gacactcgtggggattccaccgcgaaggaatgccgggcgtcccgggatagggcccaaaag 272
Query: 181 atgaggtttccagacaagtcttccaggccaacttttaaaggtcggaggaaagtttttcga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atgaggtttccagacaagtcttccaggccaacttttaaaggtcggaggaaagtttttcga 212
Query: 241 gggctgggggc 251
|||||||||||
Sbjct: 211 gggctgggggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
