NNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCACAGGCTCTTCCCCAGGACCATGCATTAGCATCTATATAT
CTTCTCGCAATATATAAATGGAACCAGTCCGCGGGAAGCCGGTGATGCAT
TGAGTTTCTTTTGTAATGCACGAATTGACCTAAAACTTCAGATAAACTGG
GATAATAAAGACGTATTCTATTATAGTATGTCCAGACTTCAAGCGCTTTC
AGTTGAATCTTCAAGCTGACATCCTGAAAGTAGGTGTCTGCAATTGAAGC
CAAAAGAATGGCGTCATCCACCATCCTAGACATATTGCCACGGGCAAACA
CGAATCTATCCAGGTCAAAGACCATGACCAGTTCCAGGTACCTTTGGTGC
TTGTAGGACTGATGAAAACTACTTATCCTAGCCATCTCCTCTTCCTCGGC
TGTTTGCCCACCTGTTTCTTCATCAACCACACCACAAGTCTCATTGTTAA
AGTTGTCCTCAGTTACGAGATACACCACGTGTTCGAAACTGGAAGAGGCC
CTGAGGGGCTCGATTTGGTAGTATCTGGAGTCAATGTTCAGTACGCCTCG
CAGACCTCCCATGCATGTACTCAGAGGAGATTCGGATTCCTGAGAGCCTT
CCACGGAGCCCACGTAAATACACGGGCCTGGGAATGCGGAAAAACCCCTA
TCAAAATGCCCCCTTGAGGGAAGAAAAAAAGGGCGAAAGGCTTGGAAAAA
AAATTTTTTGTGTCAGGN

NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACACAAACATGCTGTCAATTAC
GCACACATGCACACTCACACACACTCACACACATATACACACTGTACACA
TGTACACATATGCATACATCATGCAAGCACACACAGAAGAGGAAAAGTAA
AAAACCATAGATAAACCCTAATTAAAAAATTAAAAGAATCATCTAAGGGA
GGAAATCACGTGACATGAAGGCTAGCTTGTTGCAAACCAGAGAAGAAATA
GACGAAGTCCCTGCAGCATTTTGGTTATCTATAATAAATTTATGCTAATA
TTGAAGTCATATTGGGATTTTTAGCTGCAAAACATGATAGTAAAACACCT
TGTGGCCAAAAGAGCCAGAGATATGTCATAATACAGAGAGGATTCTCAGA
GTGTTCTTGGATGAGCAAGCGAGGGAGCCCAGGAAAGCCTTGGGAAGGGC
AGCTCAGCTGCAGGCACCAAGGCTGTTGATGAGCATGTTTCTGCCAGTAT
AAGGGATCCTGAACACAGGCCTACGCTGAGGAAAAGGACTTATTGGGCCC
TGCAAGAAGGTCTGGCTTCCCTTGTCCATCACTGTCCACCAGCTGCGGGG
GCAGACTGTACTGCGTTCCTCACAGGGTCACTGGAGCAGTGGCCAGATGA
TGATCCAGGTCAGAGGACCTAGAAGGTCATCCCGATGCCNGTGGGGGGGG
GAAAGGTTAATTCTTTTTN

Query= MSMg01no414_p11.b1 MSMg01no414_p11.b1 CHROMAT_FILE:
MSMg01no414_p11.b1 PHD_FILE: MSMg01no414_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:11 2005
         (499 letters)



>mm_chr3_97965023_97965921
          Length = 899

 Score =  959 bits (496), Expect = 0.0
 Identities = 496/496 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcacaggctcttccccaggaccatgcattagcatctatatatcttctcgcaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ggaattcttcacaggctcttccccaggaccatgcattagcatctatatatcttctcgcaa 640

                                                                       
Query: 64  tatataaatggaaccagtccgcgggaagccggtgatgcattgagtttcttttgtaatgca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tatataaatggaaccagtccgcgggaagccggtgatgcattgagtttcttttgtaatgca 580

                                                                       
Query: 124 cgaattgacctaaaacttcagataaactgggataataaagacgtattctattatagtatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cgaattgacctaaaacttcagataaactgggataataaagacgtattctattatagtatg 520

                                                                       
Query: 184 tccagacttcaagcgctttcagttgaatcttcaagctgacatcctgaaagtaggtgtctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tccagacttcaagcgctttcagttgaatcttcaagctgacatcctgaaagtaggtgtctg 460

                                                                       
Query: 244 caattgaagccaaaagaatggcgtcatccaccatcctagacatattgccacgggcaaaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caattgaagccaaaagaatggcgtcatccaccatcctagacatattgccacgggcaaaca 400

                                                                       
Query: 304 cgaatctatccaggtcaaagaccatgaccagttccaggtacctttggtgcttgtaggact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cgaatctatccaggtcaaagaccatgaccagttccaggtacctttggtgcttgtaggact 340

                                                                       
Query: 364 gatgaaaactacttatcctagccatctcctcttcctcggctgtttgcccacctgtttctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gatgaaaactacttatcctagccatctcctcttcctcggctgtttgcccacctgtttctt 280

                                                                       
Query: 424 catcaaccacaccacaagtctcattgttaaagttgtcctcagttacgagatacaccacgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 catcaaccacaccacaagtctcattgttaaagttgtcctcagttacgagatacaccacgt 220

                           
Query: 484 gttcgaaactggaaga 499
           ||||||||||||||||
Sbjct: 219 gttcgaaactggaaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no414_p11.g1 MSMg01no414_p11.g1 CHROMAT_FILE:
MSMg01no414_p11.g1 PHD_FILE: MSMg01no414_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:12 2005
         (518 letters)



>mm_chr3_97788042_97788959
          Length = 918

 Score =  971 bits (502), Expect = 0.0
 Identities = 514/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacacaaacatgctgtcaattacgcacacatgcacactcacacacactcacacacatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacacaaacatgctgtcaattacgcacacatgcacactcacacacactcacacacatata 260

                                                                       
Query: 61  cacactgtacacatgtacacatatgcatacatcatgcaagcacacacagaagaggaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacactgtacacatgtacacatatgcatacatcatgcaagcacacacagaagaggaaaag 320

                                                                       
Query: 121 taaaaaaccatagataaaccctaattaaaaaattaaaagaatcatctaagggaggaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 taaaaaaccatagataaaccctaattaaaaaattaaaagaatcctctaagggaggaaatc 380

                                                                       
Query: 181 acgtgacatgaaggctagcttgttgcaaaccagagaagaaatagacgaagtccctgcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgtgacatgaaggctagcttgttgcaaaccagagaagaaatagacgaagtccctgcagc 440

                                                                       
Query: 241 attttggttatctataataaatttatgctaatattgaagtcatattgggatttttagctg 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttgggaatctataataaatttatgctaatattgaagtcatattgggatttttagctg 500

                                                                       
Query: 301 caaaacatgatagtaaaacaccttgtggccaaaagagccagagatatgtcataatacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaacatgatagtaaaacaccttgtggccaaaagagccagagatatgtcataatacaga 560

                                                                       
Query: 361 gaggattctcagagtgttcttggatgagcaagcgagggagcccaggaaagccttgggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggattctcagagtgttcttggatgagcaagcgagggagcccaggaaagccttgggaag 620

                                                                       
Query: 421 ggcagctcagctgcaggcaccaaggctgttgatgagcatgtttctgccagtataagggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcagctcagctgcaggcaccaaggctgttgatgagcatgtttctgccagtataagggat 680

                                                 
Query: 481 cctgaacacaggcctacgctgaggaaaaggacttattg 518
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 681 cctgaacacaggcctatgctgaggaaaaggacttattg 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)