BAC Information

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BAC

Clone NameMSMg01-415E10
Chromosome3 (Build37)
Map Location 46,214,993 - 46,215,277
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849, LOC383850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415E10.T7 (MSMg01no415_e10.b1)MSMg01-415E10.TJ (MSMg01no415_e10.g1)
ACCAG511373AG511374
length724722
length of high quality
(start - end)
465 (65 - 529)280 (71 - 350)
definitionCHROMAT_FILE: MSMg01no415_e10.b1 PHD_FILE: MSMg01no415_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:36 2005CHROMAT_FILE: MSMg01no415_e10.g1 PHD_FILE: MSMg01no415_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGGCGGCGCTAATACGACTCACATTCGAAAGAGGATCCGCGGAATT
CTCAATTGCAAATCAAATGGCTGAGAAGCACCTGAAAAAATGTTCAAAAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCATGTGACAGCAGATGCTG
GCATGTGGGGAGCCGCACTCACATTTGCCATTATAAGATGGCGCTGACAG
CTGTGTTCTAAGTAGTAAACAATCTGCACATGTGCAGGGGCAGTTTTCCC
GCCATGTGCTCTTTCTTTCTCGTGATGACAACTGGGCCAATGGGCTGCAG
CCAATCAGGGAGTGATACATCCTAGGTGGAGGATAATTCTCCTTAAAAGA
GACGGGGTTCTGGCACTCCCTCTTTTCGTCTCTTTCTCTTCCTCTGCTCT
CTGCCTCTCTCCCTCTCTGCCCCTCTCTCTGCCTTTCTCTCTGTGTCTCT
CTGCGTCTCTCTCTCTCTTCCTCTCTGACTCTCTCTGCCGCGTTCTTCCT
CTCTCGCTCCTGAGCAATCCACACCACCTTGCAGCAGAACATTTTGGATT
GCTGCGCCCTTCCCGGCCCGCTGCTACTTTGCACTTTACTGCTATAGAAT
CGCACTAATTATCCACACTCCTCCCTTGTCCCTTGGTTTTTCCAACTTTG
CCTTACCCCCTTGCTTACCTTCCC
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTATTGAGAAAATATCATTACTTGGAATAT
TAGAAATAGAGAAATCAGGATAGAGATGAATTGAATGCTTCCTAAAGGGG
CTATTTCGAGAGAATTCTTGTTAGTGATCCTTTGGTACAGACTACCCATG
TTATCCACACACCAGACATTCCATGACTGATGTAAGCGTTGTTATATTGT
GACTGGAGCAGTCAACAGTATTCTACCTGGATGTGTAGATTGATTGCTAG
TGGTTGCAGTGNCTGGTACCTTAATTCATGACAAATTTTGAGAGAAGGAA
AAATCATAGGCAACAGTGATGGCATCTCCCATTTATCATGTTGCTTTCTA
AAATATTTTCATGCATGTATATTCCTACTGCCTTCTGCACCTGAACATCC
CTCTTAAGGTAAAATGTATTTGCCATACAGGTTCATGTCATAGGTGGACA
AAGCAATGACCAAAATATCTTTCTGTTTTCATAATCTGCTTTCGCACTTT
AATATACTACTTACATTTCCTATTCCTTTTATTGCCTTTACATCTCCTCT
CTTGCTTCATTCTTCCATCCGGGACCACCGCTCTTCTTTTTTTTCCTCTG
TTTCCCCCCTTTTGTTCTTCCTTATTCTTGCCTCGTTCTTTTCGTCCGTT
TTCCCTCCTACTCTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_e10.g1 MSMg01no415_e10.g1 CHROMAT_FILE:
MSMg01no415_e10.g1 PHD_FILE: MSMg01no415_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:37 2005
         (280 letters)



>mm_chr3_46214793_46215477
          Length = 685

 Score =  476 bits (246), Expect = e-139
 Identities = 274/285 (96%), Gaps = 5/285 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattgagaaaatatcattacttggaatattagaaatagagaaatcaggatagagatgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 485 ctattgagaaaatatcattacttggaatattagaaatagagaaatcaggagagagatgaa 426

                                                                       
Query: 61  ttgaatgcttcctaaaggggctatttcgagagaattcttgttagtgatcctttggtacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttgaatgcttcctaaaggggctatttcgagagaattcttgttagtgatcctttggtacag 366

                                                                       
Query: 121 actacccatgttatccacacaccagacattccatg---actgatgtaagcgttgttatat 177
           ||||||||||||||||||||| |||||||||||||   |||||||||||||||| |||||
Sbjct: 365 actacccatgttatccacacagcagacattccatgcctactgatgtaagcgttggtatat 306

                                                                       
Query: 178 tgtgactggagcagtcaacagtattctacctggatgtgtagattgattgctagtggttg- 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 305 tgtgactggagcagtcaacagtattctacctggatgtgtagattgattgctagtggttgg 246

                                                        
Query: 237 cagtgnctggtaccttaattcatgacaaat-tttgagagaaggaa 280
           ||||| |||||||||||| ||||||||||  ||||||||||||||
Sbjct: 245 cagtgtctggtaccttaactcatgacaaaactttgagagaaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 685
Length adjustment: 9
Effective length of query: 271
Effective length of database: 676
Effective search space:   183196
Effective search space used:   183196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)