BAC Information

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BAC

Clone NameMSMg01-415G14
Chromosome3 (Build37)
Map Location 58,060,417 - 58,246,637
singlet/doubletdoublet
Overlap geneTsc22d2
Upstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
Downstream geneD3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415G14.T7 (MSMg01no415_g14.b1)MSMg01-415G14.TJ (MSMg01no415_g14.g1)
ACCAG511477AG511478
length717714
length of high quality
(start - end)
455 (43 - 497)221 (318 - 538)
definitionCHROMAT_FILE: MSMg01no415_g14.b1 PHD_FILE: MSMg01no415_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:47 2005CHROMAT_FILE: MSMg01no415_g14.g1 PHD_FILE: MSMg01no415_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,060,417 - 58,060,868)(58,246,417 - 58,246,637)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAAGTTGCTCTGGAGGCATCTGCAACAGCACATGAGAACAAGACTGTA
GGTGTCTGAGACAGGATGGAACTCAGCTTCACTGGTAAACATCTGGATAT
GTCGGACAGTAGAGTCAACCTAGTTCTCTATCTCCAGCCTCATATTCTCT
GCCTGCCTGAAATAAGAGCAAATATTTGTTGAACGTTTACTATGAATGTT
TCCCAGCTTTTCCACAGGAAGTGATAGATGAGTGAATTTTAATCTATTTT
TTAATAATGTATTTTTTCCATAAAATAAGGTCTCTGATGGCTCCCCTGTA
CACACACAGAGGGAAGGGGCATGCATATTTAGAAGTTGAAAGGTGGACCA
TTTCCTCACACAGCAGTCAGACTGTGGCTGCCATTGTATTGCTGAACTAT
AATCTATCACACATTTGAGAAGCAAACTATTCTCACTAAGTGAGTGTGTT
TTTTGCTTAGAGTTTTATTTTTCGCAATATGAGGTGACCTATTTTGACGC
CATTTGGTCTCCTACTCATGGCAATCCTCCTGTCTCATATTTTCCAGCGA
CGAGATTGTCCGCCTGGTCCTCCTTCCAAATTTTTACATTTCTTACTCAT
TCCATTTCCATGTCATTTTTTTCCACCCTTAACTTTCTTCTTACGTCCTC
CCCTGTTCTCCCATCCC
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTTCAACTGACCAATCCCTTTGACATTG
ATCAGAAATGAGTCTAACAGGAAGTAAAAGAAGCCAAGTTATTCTGAAGA
TGAGCAGGACAGGACAAGGATTTGAAGATTTACTTAGATGAGATAAAGAT
TCATAATGCTTTTAAAATGCCTAATAATTAGTGGGAGTTCTTAGTAAATG
AGATTTTGGAGCACGAAGAAATTCCAAGACACTTTACTCTTTTTAGTATT
AGTAGATCTGTGTACTTATAACCCTAAGAGGTTATTAACAACTAAGACAA
CTATTATCTAAGAGGTAAATAACAACTACAAAGAGAAGACATCTTTGTGA
TTTCTAAAATTAAAACTGTGATTTCTTTTAAGCAATACCTCCTTACCATT
TTGGAACTATGGTTATATTAGTACTATTTAACTTATATGACCAGAAATGG
AAGCCTATACTTATAATTAGGACAGCTATAAGAACAGCTAACTAGACCAT
ATACATTCTTCAGTATTTCCTGTGTTATATGGCAGTAATCCTCTTTCTGG
CATCATTCAAGCGACGCTGGCCTTCTAGAGAATCCTTTTTATCTTCTATC
GACACTTTAAGGAAGTCTTTGCTGTCTCTGCCTTTGTGGGCAAGATTATC
AACCCTTTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_g14.b1 MSMg01no415_g14.b1 CHROMAT_FILE:
MSMg01no415_g14.b1 PHD_FILE: MSMg01no415_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:47 2005
         (455 letters)



>mm_chr3_58060214_58061068
          Length = 855

 Score =  729 bits (377), Expect = 0.0
 Identities = 434/453 (95%), Gaps = 2/453 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaagttgctctggaggcatctgcaacagcacatgagaacaagactgtaggtgt 63
           |||||||||||  |||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 204 ggaattcaaaggagctctggaggcacctgcaacagcacacgagaacaagactgtaggtgt 263

                                                                       
Query: 64  ctgagacaggatggaactcagcttcactggtaaacatctggatatgtcggacagtagagt 123
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 ccgagacaggatggaactcagcttcactggtaaacatccggatatgtcggacagtagagt 323

                                                                       
Query: 124 caacctagttctctatctccagcctcatattctctgcctgcctgaaataagagcaaatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caacctagttctctatctccagcctcatattctctgcctgcctgaaataagagcaaatat 383

                                                                       
Query: 184 ttgttgaacgtttactatgaatgtttcccagcttttccacaggaagtgatagatgagtga 243
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggttgaacatttactatgaatgtttcccagcttttccacaggaagtgatagatgagtga 443

                                                                       
Query: 244 attttaatctatttttt-aataatgtattttttccataaaataaggtctctgatggctcc 302
           ||||||||||||||||| ||||| | |   ||||||||||||||||||||||||||||||
Sbjct: 444 attttaatctatttttttaataacggaacatttccataaaataaggtctctgatggctcc 503

                                                                       
Query: 303 cctgtacacacacagagggaaggggcatgcatatttagaagttgaaaggtggaccatttc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 cctgtacacacacagagggaaggggcatgcatatttagaagttgaaaggtgaaccatttc 563

                                                                       
Query: 363 ctcacacagcagtcagactgtggctgccattgtattgctgaactataatctatcacacat 422
           ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcacacaata-tcagactgtggctgccattgtattgctgaactataatctatcacacat 622

                                            
Query: 423 ttgagaagcaaactattctcactaagtgagtgt 455
           |||||||||||||||||||||||| ||||||||
Sbjct: 623 ttgagaagcaaactattctcactaggtgagtgt 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no415_g14.g1 MSMg01no415_g14.g1 CHROMAT_FILE:
MSMg01no415_g14.g1 PHD_FILE: MSMg01no415_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:47 2005
         (221 letters)



>mm_chr3_58246217_58246837
          Length = 621

 Score =  427 bits (221), Expect = e-124
 Identities = 221/221 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaccctaagaggttattaacaactaagacaactattatctaagaggtaaataacaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataaccctaagaggttattaacaactaagacaactattatctaagaggtaaataacaact 362

                                                                       
Query: 61  acaaagagaagacatctttgtgatttctaaaattaaaactgtgatttcttttaagcaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acaaagagaagacatctttgtgatttctaaaattaaaactgtgatttcttttaagcaata 302

                                                                       
Query: 121 cctccttaccattttggaactatggttatattagtactatttaacttatatgaccagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cctccttaccattttggaactatggttatattagtactatttaacttatatgaccagaaa 242

                                                    
Query: 181 tggaagcctatacttataattaggacagctataagaacagc 221
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggaagcctatacttataattaggacagctataagaacagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space:   129744
Effective search space used:   129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)