BAC Information

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BAC

Clone NameMSMg01-415J08
Chromosome3 (Build37)
Map Location 15,004,146 - 15,004,386
singlet/doubletsinglet
Overlap genenone
Upstream gene0710005M24Rik, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323
Downstream geneLOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415J08.T7 (MSMg01no415_j08.b1)MSMg01-415J08.TJ (MSMg01no415_j08.g1)
ACCAG511608AG511609
length658730
length of high quality
(start - end)
79 (88 - 166)241 (72 - 312)
definitionCHROMAT_FILE: MSMg01no415_j08.b1 PHD_FILE: MSMg01no415_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:00 2005CHROMAT_FILE: MSMg01no415_j08.g1 PHD_FILE: MSMg01no415_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTTCNNNNGGGGGNNNNNNNNCTCTATAATTGGGCGCTAAAGACTCC
TATCCAAGAGGACCGCGGAATCTATTCTTCGAAACACTTGTCTGTCACTA
TAGCAGTACCATGCAGTTTTTATCACAATTGCTCTATAGTACAGCNTTTA
GGTCAGGCATGGTGGATTCTGGCCAGAGGGTTCTTTTTTAATCCCCTTGG
AAAAAAAAAAAATTTTTTTGGGGCCAACCCCACAATTTTTTTTTTTTTTG
GCAAAAAAAATTTTCCAAAATGGCCCCTCCCCAAAAACCCCCGAAAAAAA
AATTTTGGGGGGGTAAAATATTTCTTTTGCGGGGGGGGTCTCGTTCCCCT
TCCTTCCCATTATCCTCTTCCTTCTCCTTTGTTTCCCGCTGTGTCTCCTC
CCCTCTCTCTTCCCTCTCCCCCCTTCTTCTTATCTTTTTTACTCTCNCCN
ANGGGGGGGGAGAAAGACCCAACCCCACCCCCTTTTTTTTTTTTTTTTTG
GAGAACGGCCGACCCCCCCCCCCCCCCCTTATTTNACCCCTCTACGAAAT
GGGGACGAAACCCCTTTTCTCTCCCCTTCCCCTCTCTCCCCCCCCCCTGA
TTACCCTTGTTTCTTCCTGACATTCCTCATTTCTTCCTCATTCTCTTTCC
TTTCCTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATGATTTGGTTGACTGCCAGCTTGATGG
GGTGGACAACCCATTGGAAATAAACAAAAGCATTTTCTAAAAAAAAAAAA
CCCAAAATGCTTTTGCTTGGGGAGCACAAATAGCAATGTAACTAGCCACC
TTGAGCTCACTATAGTGTGTTCTTTTCACCTTTGTAAAATCATTGTTAAG
GACAATGGGCATAGTAAGTACTGTGGGATTGAATACATTTGGGCTTAGTG
ATCCAATGCCGGTATATTACTTCAGGAACAGAAATCCTCACATAAGAGTC
AACCCATTAATTACATTTTGTTTACTAAGCTAAAAAATAGATCGTAGACA
TGTTTCAACAAGGAACAACTAAAAGAGCATTTTGCTCCGACCTCATTTTG
TAAAATCCAATTATCTGGGACAATGCTTTGTTTGAATAGTCTCACTTTAT
TGAGATAAAGGCTCCTTGAAAAAAAGAAAACCCTACTTTATGGAAACCAG
ATAACTCAAGCGAAGCATACAAATGAATGCCAGACATATTANAGGCACTG
GAAACAACAACGCACACCGACAGAACCGCTCCCTCTGGCGTGGTCCCGCA
TATGCATTGTGACTTCTAACTTCCCGGTTGGCTTTGACTAAAATTCATCC
TCCCCATCTCCAACAGATTCAAACACCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_j08.g1 MSMg01no415_j08.g1 CHROMAT_FILE:
MSMg01no415_j08.g1 PHD_FILE: MSMg01no415_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:01 2005
         (241 letters)



>mm_chr3_15003946_15004586
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgatttggttgactgccagcttgatggggtggacaacccattggaaataaacaaaagc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 aatgatttggttgactgccagcttgatggggtagacaacccattggaaataaacaaaagc 382

                                                                       
Query: 61  attttctaaaaaaaaaaaacccaaaatgcttttgcttggggagcacaaatagcaatgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttctaaaaaaaaaaaacccaaaatgcttttgcttggggagcacaaatagcaatgtaa 322

                                                                       
Query: 121 ctagccaccttgagctcactatagtgtgttcttttcacctttgtaaaatcattgttaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagccaccttgagctcactatagtgtgttcttttcacctttgtaaaatcattgttaagg 262

                                                                       
Query: 181 acaatgggcatagtaagtactgtgggattgaatacatttgggcttagtgatccaatgccg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatgggcacagtaagtactgtgggattgaatacatttgggcttagtgatccaatgccg 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)